Solyc04g005600.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc04g005600.1 T280091_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.741 0.774
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.703 0.699
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.703 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g005600.1.1 Myb 14 61
Solyc04g005600.1.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400002823 Solanum tuberosum PGSC0003DMG400002823 I 0.905
Bo2g012520 Brassica oleracea Bo2g012520 I 0.780
Bra006296 Brassica rapa Bra006296 I 0.780
Gorai.008G179600 Gossypium raimondii Gorai.008G179600 I 0.779
cassava3811.m1 Manihot esculenta cassava3811.m1 I 0.754
TCM_011659 Theobroma cacao TCM_011659 I 0.753
Cla010483 Citrullus lanatus Cla010483 I 0.753
Cucsa.158170 Cucumis sativus Cucsa.158170 I 0.753
POPTR_0010s17300 Populus trichocarpa POPTR_0010s17300 I 0.752
SapurV1A.0063s0570 Salix purpurea SapurV1A.0063s0570 I 0.752
GRMZM2G079123 Zea mays GRMZM2G079123 I 0.747
MYB106 Arabidopsis thaliana AT3G01140 D 0.741
BGIOSGA026935 Oryza indica BGIOSGA026935 I 0.741
Bo5g156410 Brassica oleracea Bo5g156410 I 0.741
Bra039142 Brassica rapa Bra039142 I 0.741
MYB106 Arabidopsis lyrata fgenesh2_kg.3__117__AT3G01140.1 I 0.741
GLYMA09G37040 Glycine max GLYMA09G37040 I 0.741
GLYMA13G05550 Glycine max GLYMA13G05550 I 0.741
GLYMA18G49630 Glycine max GLYMA18G49630 I 0.741
LPERR08G12960 Leersia perrieri LPERR08G12960 I 0.741
OB08G23170 Oryza brachyantha OB08G23170 I 0.741
OBART08G15700 Oryza barthii OBART08G15700 I 0.741
OGLUM08G16450 Oryza glumaepatula OGLUM08G16450 I 0.741
OLONG_004507 Oryza longistaminata OLONG_004507 I 0.741
OMERI08G12990 Oryza meridionalis OMERI08G12990 I 0.741
ONIVA08G16810 Oryza nivara ONIVA08G16810 I 0.741
OPUNC08G13770 Oryza punctata OPUNC08G13770 I 0.741
ORGLA08G0137800 Oryza glaberrima ORGLA08G0137800 I 0.741
ORUFI08G17610 Oryza rufipogon ORUFI08G17610 I 0.741
PGSC0003DMG400001339 Solanum tuberosum PGSC0003DMG400001339 I 0.741
POPTR_0017s12230 Populus trichocarpa POPTR_0017s12230 I 0.741
PRUPE_ppa006769mg Prunus persica PRUPE_ppa006769mg I 0.741
Si013994m.g Setaria italica Si013994m.g I 0.741
TCM_018639 Theobroma cacao TCM_018639 I 0.741
VIT_14s0108g01080 Vitis vinifera VIT_14s0108g01080 I 0.741
Ca_10504 Cicer arietinum Ca_10504 I 0.741
Pm015916 Prunus mume Pm015916 I 0.741
cassava1759.valid.m1 Manihot esculenta cassava1759.valid.m1 I 0.741
cassava360.valid.m1 Manihot esculenta cassava360.valid.m1 I 0.741
Bostr.1460s0105 Boechera stricta Bostr.1460s0105 I 0.741
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.741
Carubv10013887m.g Capsella rubella Carubv10013887m.g I 0.741
Ciclev10011948m.g Citrus clementina Ciclev10011948m.g I 0.741
Eucgr.J01362 Eucalyptus grandis Eucgr.J01362 I 0.741
evm.TU.supercontig_14.102 Carica papaya evm.TU.supercontig_14.102 I 0.741
gene04423-v1.0-hybrid Fragaria vesca gene04423-v1.0-hybrid I 0.741
Gorai.011G122800 Gossypium raimondii Gorai.011G122800 I 0.741
Gorai.012G052500 Gossypium raimondii Gorai.012G052500 I 0.741
Lus10033003.g Linum usitatissimum Lus10033003.g I 0.741
MDP0000121476 Malus domestica MDP0000121476 I 0.741
MDP0000274301 Malus domestica MDP0000274301 I 0.741
MDP0000278681 Malus domestica MDP0000278681 I 0.741
MDP0000742771 Malus domestica MDP0000742771 I 0.741
orange1.1g016708m.g Citrus sinensis orange1.1g016708m.g I 0.741
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.741
Pavir.J33881 Panicum virgatum Pavir.J33881 I 0.741
SapurV1A.0438s0010 Salix purpurea SapurV1A.0438s0010 I 0.741
PK22137.1 Cannabis sativa PK22137.1 I 0.741
LjSGA_020545.1 Lotus japonicus LjSGA_020545.1 I 0.741
mgf016794m Mimulus guttatus mgf016794m I 0.739
AMTR_s00010p00267100 Amborella trichopoda AMTR_s00010p00267100 I 0.736
ATMYB16 Arabidopsis thaliana AT5G15310 I 0.736
Bo3g010230 Brassica oleracea Bo3g010230 I 0.736
Bo9g164230 Brassica oleracea Bo9g164230 I 0.736
Bra008705 Brassica rapa Bra008705 I 0.736
Bra023515 Brassica rapa Bra023515 I 0.736
ATMYB16 Arabidopsis lyrata fgenesh2_kg.6__1513__AT5G15310.1 I 0.736
Ca_22367 Cicer arietinum Ca_22367 I 0.736
Bostr.2902s0269 Boechera stricta Bostr.2902s0269 I 0.736
Cagra.1036s0022 Capsella grandiflora Cagra.1036s0022 I 0.736
Carubv10001433m.g Capsella rubella Carubv10001433m.g I 0.736
Thhalv10014101m.g Eutrema salsugineum Thhalv10014101m.g I 0.736
GLYMA19G02890 Glycine max GLYMA19G02890 I 0.731
BRADI3G36660 Brachypodium distachyon BRADI3G36660 I 0.730
MDP0000716457 Malus domestica MDP0000716457 I 0.730
GLYMA07G35561 Glycine max GLYMA07G35561 I 0.729
GLYMA20G04240 Glycine max GLYMA20G04240 I 0.729
MTR_4g082290 Medicago truncatula MTR_4g082290 I 0.729
Ca_27606 Cicer arietinum Ca_27606 I 0.729
VIT_17s0000g06410 Vitis vinifera VIT_17s0000g06410 I 0.727
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.727
GRMZM2G111117 Zea mays GRMZM2G111117 I 0.726
Sb07g021210 Sorghum bicolor Sb07g021210 I 0.726
VIT_01s0026g02770 Vitis vinifera VIT_01s0026g02770 I 0.723
Gorai.013G088300 Gossypium raimondii Gorai.013G088300 I 0.723
Bo1g157620 Brassica oleracea Bo1g157620 I 0.722
Bra021483 Brassica rapa Bra021483 I 0.722
MTR_6g012690 Medicago truncatula MTR_6g012690 I 0.722
Solyc02g088190.2 Solanum lycopersicum Solyc02g088190.2 I 0.722
chr1.CM0141.320.nc Lotus japonicus chr1.CM0141.320.nc I 0.722
SapurV1A.0302s0210 Salix purpurea SapurV1A.0302s0210 I 0.720
SapurV1A.3756s0010 Salix purpurea SapurV1A.3756s0010 I 0.720
POPTR_0008s08870 Populus trichocarpa POPTR_0008s08870 I 0.717
SapurV1A.0801s0120 Salix purpurea SapurV1A.0801s0120 I 0.717
GSMUA_Achr10G29680_001 Musa acuminata GSMUA_Achr10G29680_001 I 0.711
POPTR_0008s08920 Populus trichocarpa POPTR_0008s08920 I 0.711
PGSC0003DMG400018439 Solanum tuberosum PGSC0003DMG400018439 I 0.709
Solyc05g007690.1 Solanum lycopersicum Solyc05g007690.1 I 0.709
cassava20416.m1 Manihot esculenta cassava20416.m1 I 0.709
mgf014886m Mimulus guttatus mgf014886m I 0.704
MYB39 Arabidopsis thaliana AT4G17785 D 0.703
MYB39 Arabidopsis lyrata fgenesh2_kg.7__2528__AT4G17785.1 I 0.703
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I 0.703
Cagra.3356s0071 Capsella grandiflora Cagra.3356s0071 I 0.703
Carubv10006864m.g Capsella rubella Carubv10006864m.g I 0.703
Ciclev10033327m.g Citrus clementina Ciclev10033327m.g I 0.701
orange1.1g039016m.g Citrus sinensis orange1.1g039016m.g I 0.701
PGSC0003DMG400024299 Solanum tuberosum PGSC0003DMG400024299 I 0.700
Solyc01g010910.1 Solanum lycopersicum Solyc01g010910.1 I 0.700
Lus10015712.g Linum usitatissimum Lus10015712.g I 0.700
Lus10019086.g Linum usitatissimum Lus10019086.g I 0.700
MTR_4g082230 Medicago truncatula MTR_4g082230 I 0.699
MTR_7g011170 Medicago truncatula MTR_7g011170 I 0.697
TCM_001102 Theobroma cacao TCM_001102 I 0.697
Gorai.007G236800 Gossypium raimondii Gorai.007G236800 I 0.697
GSMUA_Achr5G23240_001 Musa acuminata GSMUA_Achr5G23240_001 I 0.696
GSMUA_Achr6G02550_001 Musa acuminata GSMUA_Achr6G02550_001 I 0.696
GSMUA_Achr7G18410_001 Musa acuminata GSMUA_Achr7G18410_001 I 0.696
MDP0000204699 Malus domestica MDP0000204699 I 0.693
PGSC0003DMG400018412 Solanum tuberosum PGSC0003DMG400018412 I 0.692
Solyc05g007710.2 Solanum lycopersicum Solyc05g007710.2 I 0.692
Thhalv10021048m.g Eutrema salsugineum Thhalv10021048m.g I 0.692
PK26207.1 Cannabis sativa PK26207.1 I 0.692
F775_12009 Aegilops tauschii F775_12009 I 0.691
MLOC_58915 Hordeum vulgare MLOC_58915 I 0.691
Traes_2AL_097BADCFE Triticum aestivum Traes_2AL_097BADCFE I 0.691
Traes_2BL_230A3A2D0 Triticum aestivum Traes_2BL_230A3A2D0 I 0.691
Traes_2DL_BDECC07BD Triticum aestivum Traes_2DL_BDECC07BD I 0.691
TRIUR3_01098 Triticum urartu TRIUR3_01098 I 0.691
gene30024-v1.0-hybrid Fragaria vesca gene30024-v1.0-hybrid I 0.688
Pm006464 Prunus mume Pm006464 I 0.687
Lus10026620.g Linum usitatissimum Lus10026620.g I 0.687
GLYMA02G12266 Glycine max GLYMA02G12266 I 0.685
Cla016484 Citrullus lanatus Cla016484 I 0.685
Gorai.008G179800 Gossypium raimondii Gorai.008G179800 I 0.683
TCM_011660 Theobroma cacao TCM_011660 I 0.681
AMTR_s00038p00183620 Amborella trichopoda AMTR_s00038p00183620 I 0.680
AtMYB93 Vitis vinifera VIT_18s0001g05670 I 0.678
Gorai.003G039500 Gossypium raimondii Gorai.003G039500 I 0.676
Cla017248 Citrullus lanatus Cla017248 I 0.674
LPERR02G26970 Leersia perrieri LPERR02G26970 I 0.673
OB02G39890 Oryza brachyantha OB02G39890 I 0.673
OBART02G32900 Oryza barthii OBART02G32900 I 0.673
OGLUM02G33500 Oryza glumaepatula OGLUM02G33500 I 0.673
OMERI02G31500 Oryza meridionalis OMERI02G31500 I 0.673
ONIVA02G35050 Oryza nivara ONIVA02G35050 I 0.673
OPUNC02G30360 Oryza punctata OPUNC02G30360 I 0.673
ORGLA02G0284500 Oryza glaberrima ORGLA02G0284500 I 0.673
ORUFI02G34560 Oryza rufipogon ORUFI02G34560 I 0.673
PRUPE_ppa026006mg Prunus persica PRUPE_ppa026006mg I 0.673
Pm004557 Prunus mume Pm004557 I 0.673
MDP0000574942 Malus domestica MDP0000574942 I 0.673
Cucsa.338590 Cucumis sativus Cucsa.338590 I 0.672
Ciclev10023440m.g Citrus clementina Ciclev10023440m.g I 0.671
orange1.1g047101m.g Citrus sinensis orange1.1g047101m.g I 0.671
GLYMA02G12242 Glycine max GLYMA02G12242 I 0.670
Gorai.013G088400 Gossypium raimondii Gorai.013G088400 I 0.670
e_gw1.389.9.1 Physcomitrella patens e_gw1.389.9.1 I 0.668
PRUPE_ppa019923mg Prunus persica PRUPE_ppa019923mg I 0.667
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I 0.667
Pm002011 Prunus mume Pm002011 I 0.667
cassava44382.m1 Manihot esculenta cassava44382.m1 I 0.667
evm.TU.supercontig_752.1 Carica papaya evm.TU.supercontig_752.1 I 0.667
gene16287-v1.0-hybrid Fragaria vesca gene16287-v1.0-hybrid I 0.667
MDP0000320772 Malus domestica MDP0000320772 I 0.667
BGIOSGA016547 Oryza indica BGIOSGA016547 I 0.663
BRADI3G58770 Brachypodium distachyon BRADI3G58770 I 0.663
BRADI5G12417 Brachypodium distachyon BRADI5G12417 I 0.663
F775_26161 Aegilops tauschii F775_26161 I 0.663
F775_26732 Aegilops tauschii F775_26732 I 0.663
GRMZM2G032655 Zea mays GRMZM2G032655 I 0.663
GRMZM2G159547 Zea mays GRMZM2G159547 I 0.663
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I 0.663
MLOC_52134 Hordeum vulgare MLOC_52134 I 0.663
OB04G22310 Oryza brachyantha OB04G22310 I 0.663
OBART04G14990 Oryza barthii OBART04G14990 I 0.663
ONIVA04G13130 Oryza nivara ONIVA04G13130 I 0.663
ORGLA04G0119800 Oryza glaberrima ORGLA04G0119800 I 0.663
ORUFI04G16390 Oryza rufipogon ORUFI04G16390 I 0.663
OS04G0461000 Oryza sativa OS04G0461000 I 0.663
POPTR_0005s07590 Populus trichocarpa POPTR_0005s07590 I 0.663
Sb04g027540 Sorghum bicolor Sb04g027540 I 0.663
Si010352m.g Setaria italica Si010352m.g I 0.663
TCM_034902 Theobroma cacao TCM_034902 I 0.663
Traes_2DL_C964675DE Triticum aestivum Traes_2DL_C964675DE I 0.663
Traes_6AL_2BA02CAA9 Triticum aestivum Traes_6AL_2BA02CAA9 I 0.663
Traes_6AL_52227091B Triticum aestivum Traes_6AL_52227091B I 0.663
Traes_6BL_0D6CD031E Triticum aestivum Traes_6BL_0D6CD031E I 0.663
Traes_6BL_5A2DB8F78 Triticum aestivum Traes_6BL_5A2DB8F78 I 0.663
Traes_6DL_499F64524 Triticum aestivum Traes_6DL_499F64524 I 0.663
Traes_6DL_8BF29D46C Triticum aestivum Traes_6DL_8BF29D46C I 0.663
TRIUR3_03772 Triticum urartu TRIUR3_03772 I 0.663
TRIUR3_23397 Triticum urartu TRIUR3_23397 I 0.663
TRIUR3_25784 Triticum urartu TRIUR3_25784 I 0.663
VIT_16s0039g01710 Vitis vinifera VIT_16s0039g01710 I 0.663
e_gw1.106.133.1 Physcomitrella patens e_gw1.106.133.1 I 0.663
e_gw1.326.5.1 Physcomitrella patens e_gw1.326.5.1 I 0.663
Cagra.1085s0031 Capsella grandiflora Cagra.1085s0031 I 0.663
Carubv10003148m.g Capsella rubella Carubv10003148m.g I 0.663
Ciclev10026023m.g Citrus clementina Ciclev10026023m.g I 0.663
Gorai.009G236900 Gossypium raimondii Gorai.009G236900 I 0.663
Gorai.009G281000 Gossypium raimondii Gorai.009G281000 I 0.663
MDP0000228252 Malus domestica MDP0000228252 I 0.663
MDP0000302984 Malus domestica MDP0000302984 I 0.663
orange1.1g045434m.g Citrus sinensis orange1.1g045434m.g I 0.663
SapurV1A.0403s0220 Salix purpurea SapurV1A.0403s0220 I 0.663
SapurV1A.2488s0010 Salix purpurea SapurV1A.2488s0010 I 0.663
POPTR_0007s05360 Populus trichocarpa POPTR_0007s05360 I 0.662
Bo1g017860 Brassica oleracea Bo1g017860 I 0.661
Bra040181 Brassica rapa Bra040181 I 0.661
BRADI3G38807 Brachypodium distachyon BRADI3G38807 I 0.661
TCM_011658 Theobroma cacao TCM_011658 I 0.661
Cucsa.312940 Cucumis sativus Cucsa.312940 I 0.661