Ca_06612 (Cicer arietinum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ca_06612 T282959_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19621.1
M01280_2.00 		Cannabis sativa
NNTTATCYN
NRGATAANN		 PBM
Lambert et al.(2019)
pTH10140 		0.721 0.804
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.714 0.793
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.714 0.793
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.714 0.793
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_06612 Myb 6 60
Ca_06612 Myb 135 180

Links

Other Myb/SANT family TFs
Other Cicer arietinum TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.859
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.845
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.840
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.815
Pm030197 Prunus mume Pm030197 I 0.815
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.808
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.782
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.773
MDP0000853568 Malus domestica MDP0000853568 I 0.771
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.767
TCM_012262 Theobroma cacao TCM_012262 I 0.764
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.754
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.749
30174.m008717 Ricinus communis 30174.m008717 I 0.748
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.724
MDP0000241185 Malus domestica MDP0000241185 N 0.722
PK19621.1 Cannabis sativa PK19621.1 D 0.721
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.719
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.714
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.710
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.686
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.681
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.681
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.681
Bo00685s060 Brassica oleracea Bo00685s060 I 0.677
Cla019277 Citrullus lanatus Cla019277 I 0.677
Cucsa.198920 Cucumis sativus Cucsa.198920 I 0.677
VIT_17s0000g04130 Vitis vinifera VIT_17s0000g04130 I 0.676
Bra014169 Brassica rapa Bra014169 I 0.672
Bo6g018000 Brassica oleracea Bo6g018000 I 0.670
Bra018772 Brassica rapa Bra018772 I 0.670