Pavir.J01189 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J01189 T289306_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8RUX5_MAIZE
M11060_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MRP1_Q2 		0.661 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01189.1.p Myb 139 185

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si007889m.g Setaria italica Si007889m.g I 0.860
Pavir.Ga00772 Panicum virgatum Pavir.Ga00772 N 0.810
Pavir.Da02101 Panicum virgatum Pavir.Da02101 I 0.805
Si032375m.g Setaria italica Si032375m.g N 0.804
Sb10g009650 Sorghum bicolor Sb10g009650 N 0.742
Si008720m.g Setaria italica Si008720m.g N 0.737
GRMZM2G121111 Zea mays GRMZM2G121111 I 0.734
Sb10g009580 Sorghum bicolor Sb10g009580 I 0.734
Sb10g006570 Sorghum bicolor Sb10g006570 I 0.723
Sb10g007420 Sorghum bicolor Sb10g007420 N 0.721
Sb01g029290 Sorghum bicolor Sb01g029290 N 0.710
OB06G14500 Oryza brachyantha OB06G14500 N 0.702
F775_02244 Aegilops tauschii F775_02244 I 0.677
Pavir.J00203 Panicum virgatum Pavir.J00203 N 0.674
GRMZM2G422083 Zea mays GRMZM2G422083 N 0.665
GRMZM2G111306 Zea mays GRMZM2G111306 I 0.661
Q8RUX5_MAIZE Zea mays Q8RUX5_MAIZE D 0.661
Sb09g003390 Sorghum bicolor Sb09g003390 I 0.661