Bra000709 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra000709 T292507_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BRN2
M07217_2.00 		Arabidopsis thaliana
CKTVHDNNNYAMGYWA
TWRCKTRNNNHDBAMG		 Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a 		0.974 0.982
BRN2
M07218_2.00 		Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH
DDTWRCKTRHDNHDBAMGHWA		 Dap-seq
OMalley et al.(2016)
ANAC070_col 		0.974 0.982
SMB
M07184_2.00 		Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA		 Dap-seq
OMalley et al.(2016)
SMB_col_a 		0.916 0.816
SMB
M07185_2.00 		Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA		 Dap-seq
OMalley et al.(2016)
SMB_colamp_a 		0.916 0.816
MDP0000762302
M02383_2.00 		Malus domestica
NNNAMKHNWN
NWNDMKTNNN		 PBM
Weirauch et al.(2014)
pTH9205 		0.906 0.789
NAC012
M00971_2.00 		Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN		 PBM
Lindemose et al.(2014)
SND1 		0.889 0.789
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra000709.1-P NAC/NAM 10 137

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.25463s0283 Boechera stricta Bostr.25463s0283 I 0.978
Cagra.12686s0005 Capsella grandiflora Cagra.12686s0005 I 0.978
Carubv10003879m.g Capsella rubella Carubv10003879m.g I 0.978
ANAC070 Arabidopsis lyrata Al_scaffold_0006_3164 I 0.974
BRN2 Arabidopsis thaliana AT4G10350 D 0.974
Bo9g088300 Brassica oleracea Bo9g088300 I 0.974
Bra037914 Brassica rapa Bra037914 I 0.974
Thhalv10029403m.g Eutrema salsugineum Thhalv10029403m.g I 0.974
Thhalv10008226m.g Eutrema salsugineum Thhalv10008226m.g I 0.971
BRN1 Arabidopsis thaliana AT1G33280 I 0.970
ANAC015 Arabidopsis lyrata fgenesh2_kg.1__3458__AT1G33280.1 I 0.969
Bostr.3359s0042 Boechera stricta Bostr.3359s0042 I 0.969
Cagra.6133s0030 Capsella grandiflora Cagra.6133s0030 I 0.969
Carubv10010920m.g Capsella rubella Carubv10010920m.g I 0.969
GLYMA09G36820 Glycine max GLYMA09G36820 I 0.968
VIT_18s0089g01120 Vitis vinifera VIT_18s0089g01120 I 0.968
Eucgr.F04097 Eucalyptus grandis Eucgr.F04097 I 0.968
PRUPE_ppa026376mg Prunus persica PRUPE_ppa026376mg I 0.967
Pm022820 Prunus mume Pm022820 I 0.967
29382.m000084 Ricinus communis 29382.m000084 I 0.967
Aquca_014_00032 Aquilegia coerulea Aquca_014_00032 I 0.967
Ciclev10024588m.g Citrus clementina Ciclev10024588m.g I 0.967
gene31175-v1.0-hybrid Fragaria vesca gene31175-v1.0-hybrid I 0.967
Gorai.004G267300 Gossypium raimondii Gorai.004G267300 I 0.967
Lus10013782.g Linum usitatissimum Lus10013782.g I 0.967
Lus10039153.g Linum usitatissimum Lus10039153.g I 0.967
MDP0000558493 Malus domestica MDP0000558493 I 0.967
orange1.1g042376m.g Citrus sinensis orange1.1g042376m.g I 0.967
GLYMA12G00540 Glycine max GLYMA12G00540 I 0.966
MTR_4g035590 Medicago truncatula MTR_4g035590 I 0.966
Ca_15792 Cicer arietinum Ca_15792 I 0.966
Cla012576 Citrullus lanatus Cla012576 I 0.966
Cucsa.237820 Cucumis sativus Cucsa.237820 I 0.966
MDP0000257674 Malus domestica MDP0000257674 I 0.966
Solyc06g063430.1 Solanum lycopersicum Solyc06g063430.1 I 0.965
TCM_036034 Theobroma cacao TCM_036034 I 0.964
AMTR_s00099p00131560 Amborella trichopoda AMTR_s00099p00131560 I 0.963
BRADI5G11247 Brachypodium distachyon BRADI5G11247 I 0.963
F775_23174 Aegilops tauschii F775_23174 I 0.963
MLOC_19175 Hordeum vulgare MLOC_19175 I 0.963
Traes_2AL_F0B17F0EA Triticum aestivum Traes_2AL_F0B17F0EA I 0.963
Traes_2BL_209C14A8F Triticum aestivum Traes_2BL_209C14A8F I 0.963
Traes_2DL_70F83D4B9 Triticum aestivum Traes_2DL_70F83D4B9 I 0.963
BGIOSGA015018 Oryza indica BGIOSGA015018 I 0.962
BGIOSGA034998 Oryza indica BGIOSGA034998 I 0.962
GRMZM2G099144 Zea mays GRMZM2G099144 I 0.962
OBART04G13830 Oryza barthii OBART04G13830 I 0.962
OLONG_020428 Oryza longistaminata OLONG_020428 I 0.962
ONIVA04G12040 Oryza nivara ONIVA04G12040 I 0.962
OB04G21050 Oryza brachyantha OB04G21050 I 0.961
OGLUM04G13590 Oryza glumaepatula OGLUM04G13590 I 0.961
ORUFI04G15090 Oryza rufipogon ORUFI04G15090 I 0.961
Sb06g017720 Sorghum bicolor Sb06g017720 I 0.961
Si012319m.g Setaria italica Si012319m.g I 0.961
mgf017656m Mimulus guttatus mgf017656m I 0.961
Pavir.Gb01599 Panicum virgatum Pavir.Gb01599 I 0.961
Pavir.J07268 Panicum virgatum Pavir.J07268 I 0.961
TRIUR3_28259 Triticum urartu TRIUR3_28259 I 0.960
GSMUA_Achr6G28890_001 Musa acuminata GSMUA_Achr6G28890_001 I 0.959
GRMZM2G435824 Zea mays GRMZM2G435824 I 0.958
cassava4621.m1 Manihot esculenta cassava4621.m1 I 0.955
POPTR_0013s09280 Populus trichocarpa POPTR_0013s09280 I 0.949
SapurV1A.1219s0030 Salix purpurea SapurV1A.1219s0030 I 0.948
POPTR_0019s09400 Populus trichocarpa POPTR_0019s09400 I 0.931
GSMUA_Achr2G05640_001 Musa acuminata GSMUA_Achr2G05640_001 I 0.929
PRUPE_ppa025341mg Prunus persica PRUPE_ppa025341mg I 0.929
TCM_033728 Theobroma cacao TCM_033728 I 0.929
Ca_13929 Cicer arietinum Ca_13929 I 0.929
Pm010886 Prunus mume Pm010886 I 0.929
29725.m000235 Ricinus communis 29725.m000235 I 0.929
gene19898-v1.0-hybrid Fragaria vesca gene19898-v1.0-hybrid I 0.929
PK10271.1 Cannabis sativa PK10271.1 I 0.929
Gorai.004G268500 Gossypium raimondii Gorai.004G268500 I 0.928
SapurV1A.0907s0070 Salix purpurea SapurV1A.0907s0070 I 0.928
GLYMA08G17140 Glycine max GLYMA08G17140 I 0.926
MTR_2g062730 Medicago truncatula MTR_2g062730 I 0.926
SMB Vitis vinifera VIT_19s0085g01210 I 0.926
cassava32687.m1 Manihot esculenta cassava32687.m1 I 0.926
LjSGA_059487.1 Lotus japonicus LjSGA_059487.1 I 0.926
Cla005561 Citrullus lanatus Cla005561 I 0.924
Bra003602 Brassica rapa Bra003602 I 0.923
PGSC0003DMG400009665 Solanum tuberosum PGSC0003DMG400009665 I 0.923
Solyc12g017400.1 Solanum lycopersicum Solyc12g017400.1 I 0.923
MDP0000501518 Malus domestica MDP0000501518 I 0.923
MDP0000652584 Malus domestica MDP0000652584 I 0.923
GLYMA15G42050 Glycine max GLYMA15G42050 I 0.922
Bo6g123980 Brassica oleracea Bo6g123980 I 0.918
Bra035127 Brassica rapa Bra035127 I 0.918
mg017416m Mimulus guttatus mg017416m I 0.917
SMB Arabidopsis thaliana AT1G79580 D 0.916
Bo6g080930 Brassica oleracea Bo6g080930 I 0.916
POPTR_0008s07950 Populus trichocarpa POPTR_0008s07950 I 0.916
POPTR_0010s18420 Populus trichocarpa POPTR_0010s18420 I 0.916
SMB Arabidopsis lyrata scaffold_202942.1 I 0.916
cassava39971.m1 Manihot esculenta cassava39971.m1 I 0.916
Bostr.20129s0396 Boechera stricta Bostr.20129s0396 I 0.916
Cagra.1725s0032 Capsella grandiflora Cagra.1725s0032 I 0.916
Carubv10020504m.g Capsella rubella Carubv10020504m.g I 0.916
SapurV1A.0093s0460 Salix purpurea SapurV1A.0093s0460 I 0.916
SapurV1A.0164s0070 Salix purpurea SapurV1A.0164s0070 I 0.916
Thhalv10019534m.g Eutrema salsugineum Thhalv10019534m.g I 0.916
Si017641m.g Setaria italica Si017641m.g I 0.913
Pavir.Aa02770 Panicum virgatum Pavir.Aa02770 I 0.913
Pavir.Ab01037 Panicum virgatum Pavir.Ab01037 I 0.913
Bo2g095440 Brassica oleracea Bo2g095440 I 0.912
GRMZM2G041746 Zea mays GRMZM2G041746 I 0.912
GRMZM2G104074 Zea mays GRMZM2G104074 I 0.912
Sb10g020860 Sorghum bicolor Sb10g020860 I 0.912
LPERR02G09170 Leersia perrieri LPERR02G09170 I 0.911
Cucsa.240210 Cucumis sativus Cucsa.240210 I 0.911
BRADI1G38730 Brachypodium distachyon BRADI1G38730 I 0.910
BRADI3G09520 Brachypodium distachyon BRADI3G09520 I 0.910
OB02G19660 Oryza brachyantha OB02G19660 I 0.910
Sb04g009180 Sorghum bicolor Sb04g009180 I 0.910
Bra008423 Brassica rapa Bra008423 I 0.909
F775_42361 Aegilops tauschii F775_42361 I 0.909
MLOC_17128 Hordeum vulgare MLOC_17128 I 0.909
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I 0.909
Traes_7AL_46F73E667 Triticum aestivum Traes_7AL_46F73E667 I 0.909
Traes_7DL_AD6EAD1A61 Triticum aestivum Traes_7DL_AD6EAD1A61 I 0.909
Traes_7DL_AD6EAD1A6 Triticum aestivum Traes_7DL_AD6EAD1A6 I 0.909
TRIUR3_14210 Triticum urartu TRIUR3_14210 I 0.909
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I 0.909
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I 0.909
OPUNC02G09610 Oryza punctata OPUNC02G09610 I 0.908
Si007822m.g Setaria italica Si007822m.g I 0.908
Lus10009939.g Linum usitatissimum Lus10009939.g I 0.908
Lus10030143.g Linum usitatissimum Lus10030143.g I 0.908
Pavir.Da01009 Panicum virgatum Pavir.Da01009 I 0.908
Pavir.J05053 Panicum virgatum Pavir.J05053 I 0.908
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I 0.906
MDP0000140229 Malus domestica MDP0000140229 I 0.906
MDP0000762302 Malus domestica MDP0000762302 D 0.906
PK22182.1 Cannabis sativa PK22182.1 I 0.906
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I 0.905
evm.TU.supercontig_118.26 Carica papaya evm.TU.supercontig_118.26 I 0.904
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I 0.904
GRMZM2G155816 Zea mays GRMZM2G155816 I 0.903
BGIOSGA007898 Oryza indica BGIOSGA007898 I 0.902
OBART02G10820 Oryza barthii OBART02G10820 I 0.902
OGLUM02G10770 Oryza glumaepatula OGLUM02G10770 I 0.902
OLONG_007664 Oryza longistaminata OLONG_007664 I 0.902
ONIVA02G12010 Oryza nivara ONIVA02G12010 I 0.902
ORGLA02G0097800 Oryza glaberrima ORGLA02G0097800 I 0.902
ORUFI02G10740 Oryza rufipogon ORUFI02G10740 I 0.901
OS02G0252200 Oryza sativa OS02G0252200 I 0.901
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I 0.901
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I 0.901
TCM_015621 Theobroma cacao TCM_015621 I 0.900
30068.m002591 Ricinus communis 30068.m002591 I 0.900
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I 0.900
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I 0.900
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I 0.900
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I 0.900
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I 0.899
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I 0.899
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I 0.899
mgf025569m Mimulus guttatus mgf025569m I 0.898
Ciclev10006623m.g Citrus clementina Ciclev10006623m.g I 0.898
orange1.1g046523m.g Citrus sinensis orange1.1g046523m.g I 0.898
GSMUA_Achr10G14400_001 Musa acuminata GSMUA_Achr10G14400_001 I 0.897
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I 0.897
Pm024260 Prunus mume Pm024260 I 0.897
Lus10001664.g Linum usitatissimum Lus10001664.g I 0.896
Lus10017340.g Linum usitatissimum Lus10017340.g I 0.896
cassava45846.m1 Manihot esculenta cassava45846.m1 I 0.895
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I 0.895
BGIOSGA021116 Oryza indica BGIOSGA021116 I 0.894
LPERR06G14120 Leersia perrieri LPERR06G14120 I 0.894
OB06G24850 Oryza brachyantha OB06G24850 I 0.894
OBART06G17120 Oryza barthii OBART06G17120 I 0.894
OGLUM06G18230 Oryza glumaepatula OGLUM06G18230 I 0.894
OMERI06G17980 Oryza meridionalis OMERI06G17980 I 0.894
ONIVA06G20460 Oryza nivara ONIVA06G20460 I 0.894
OPUNC06G15490 Oryza punctata OPUNC06G15490 I 0.894
ORUFI06G18140 Oryza rufipogon ORUFI06G18140 I 0.894
OS06G0530400 Oryza sativa OS06G0530400 I 0.894
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I 0.890
Lus10008271.g Linum usitatissimum Lus10008271.g I 0.890
Lus10033239.g Linum usitatissimum Lus10033239.g I 0.890
NAC012 Arabidopsis thaliana AT1G32770 D 0.889
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I 0.889
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I 0.889
Carubv10011900m.g Capsella rubella Carubv10011900m.g I 0.889
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I 0.889
Bo5g049360 Brassica oleracea Bo5g049360 I 0.888
AMTR_s00068p00207380 Amborella trichopoda AMTR_s00068p00207380 I 0.887
Bra023288 Brassica rapa Bra023288 I 0.887
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I 0.887
cassava32649.m1 Manihot esculenta cassava32649.m1 I 0.881
VIT_15s0048g02660 Vitis vinifera VIT_15s0048g02660 I 0.880
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I 0.879
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I 0.879
Aquca_037_00272 Aquilegia coerulea Aquca_037_00272 I 0.879
F775_11081 Aegilops tauschii F775_11081 I 0.877
GRMZM2G092465 Zea mays GRMZM2G092465 I 0.877
MLOC_66924 Hordeum vulgare MLOC_66924 I 0.877
Sb07g001550 Sorghum bicolor Sb07g001550 I 0.877
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I 0.877
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I 0.877
Pavir.J20698 Panicum virgatum Pavir.J20698 I 0.877
Pavir.J21162 Panicum virgatum Pavir.J21162 I 0.877
Cla011508 Citrullus lanatus Cla011508 I 0.876
Cucsa.193460 Cucumis sativus Cucsa.193460 I 0.876
Gorai.006G205300 Gossypium raimondii Gorai.006G205300 I 0.876
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I 0.873
SELMODRAFT_451784 Selaginella moellendorffii SELMODRAFT_451784 I 0.873
SELMODRAFT_57388 Selaginella moellendorffii SELMODRAFT_57388 I 0.873
GSMUA_Achr3G12230_001 Musa acuminata GSMUA_Achr3G12230_001 I 0.872