CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J04800
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.J04800
T298937_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J04800.1.p
NAC/NAM
10
136
PPGFRFSPTDEELVLYFLKRRIVSGRPSPYVADVDVYKSHPSHLPERSALQTGDRQWFFFSRMDRKYPNGSRASRTTGDGYWKATGKDRFICGGGGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G004531
Zea mays
GRMZM2G004531
N
0.972
Sb02g028750
Sorghum bicolor
Sb02g028750
N
0.972
Pavir.Ba01681
Panicum virgatum
Pavir.Ba01681
N
0.971
Si029088m.g
Setaria italica
Si029088m.g
N
0.953
BRADI4G34022
Brachypodium distachyon
BRADI4G34022
I
0.890
BGIOSGA029518
Oryza indica
BGIOSGA029518
N
0.880
LPERR09G11150
Leersia perrieri
LPERR09G11150
N
0.880
OMERI09G11680
Oryza meridionalis
OMERI09G11680
N
0.880
ONIVA09G15620
Oryza nivara
ONIVA09G15620
N
0.880
OGLUM09G15640
Oryza glumaepatula
OGLUM09G15640
N
0.875
ORUFI09G16180
Oryza rufipogon
ORUFI09G16180
N
0.875
OS09G0493700
Oryza sativa
OS09G0493700
N
0.875
OBART09G15000
Oryza barthii
OBART09G15000
N
0.874
ORGLA09G0115600
Oryza glaberrima
ORGLA09G0115600
N
0.874
OPUNC09G13450
Oryza punctata
OPUNC09G13450
N
0.872