CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-256
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00022805
T306391_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
XP_002647782.1
M02420_2.00
Caenorhabditis briggsae
NYGTAGYN
NRCTACRN
PBM
Weirauch et al.(2014)
pTH5737
0.895
0.657
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ZK697.2
Nuclear receptor
4
74
GNCKVCDSPNATNFHFGAHSCKACAAFFRRTVKTGQIYSCPGEKTCEINHVFRQNCRQCRLAKCLKAGMQE
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBN14151
Caenorhabditis brenneri
CBN14151
I
0.982
CRE19042
Caenorhabditis remanei
CRE19042
I
0.981
CBG06550
Caenorhabditis briggsae
CBG06550
I
0.942
CJA15660
Caenorhabditis japonica
CJA15660
I
0.910
nhr-79
Caenorhabditis elegans
WBGene00003669
I
0.906
CRE23397
Caenorhabditis remanei
CRE23397
I
0.902
CBN28846
Caenorhabditis brenneri
CBN28846
I
0.898
XP_002647782.1
Caenorhabditis briggsae
XP_002647782.1
D
0.895