CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf03171-processed-gene-0.1
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
augustus_masked-nMf.1.1.scaf03171-processed-gene-0.1
T308197_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf03171-processed-gene-0.1-mRNA-1
Nuclear receptor
12
82
LSCQVCGQQSHGRRFDVLCCLPCAAFFRRYNGLKTKRRCQRENKCEKMGIEFLKKCKICRYRKCISIGMKM
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc02855
Meloidogyne incognita
Minc02855
N
0.996
MhA1_Contig173.frz3.gene14
Meloidogyne hapla
MhA1_Contig173.frz3.gene14
N
0.987
Minc02856
Meloidogyne incognita
Minc02856
N
0.960
maker-nMf.1.1.scaf19771-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf19771-snap-gene-0.4
N
0.804