CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf52497-processed-gene-0.0
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
augustus_masked-nMf.1.1.scaf52497-processed-gene-0.0
T308230_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf52497-processed-gene-0.0-mRNA-1
Nuclear receptor
28
62
KICRVCGDKAYSYNFNVITCESCKAFFRRNANKEK
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ppa-nhr-48
Pristionchus pacificus
PPA20177
I
0.772
Minc13296
Meloidogyne incognita
Minc13296
I
0.772
Minc18589
Meloidogyne incognita
Minc18589
I
0.772
ASU_08827
Ascaris suum
ASU_08827
N
0.772
BXY_1432000
Bursaphelenchus xylophilus
BXY_1432000
I
0.772
GPUH_0001346001
Gongylonema pulchrum
GPUH_0001346001
N
0.772
MhA1_Contig1158.frz3.gene18
Meloidogyne hapla
MhA1_Contig1158.frz3.gene18
I
0.772
scaffold1545-EXSNAP2012.2
Pristionchus exspectatus
scaffold1545-EXSNAP2012.2
I
0.772