CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf01969-augustus-gene-0.11
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
maker-nMf.1.1.scaf01969-augustus-gene-0.11
T309558_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf01969-augustus-gene-0.11-mRNA-1
Nuclear receptor
19
72
TRCCICGYIASGFIYYNVMCCDGCKHFFRRSLNAEELFKCKFDGNCDVMRGMEF
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc18991
Meloidogyne incognita
Minc18991
N
0.885
Minc03976
Meloidogyne incognita
Minc03976
N
0.826
maker-nMf.1.1.scaf00198-snap-gene-0.24
Meloidogyne floridensis
maker-nMf.1.1.scaf00198-snap-gene-0.24
N
0.826
MhA1_Contig392.frz3.gene14
Meloidogyne hapla
MhA1_Contig392.frz3.gene14
N
0.794
Minc17667
Meloidogyne incognita
Minc17667
N
0.770
MhA1_Contig1386.frz3.gene10
Meloidogyne hapla
MhA1_Contig1386.frz3.gene10
N
0.754