Gfo_R009749 (Geospiza fortis)
p53

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00870 (P53) IPR011615 Gfo_R009749 T311238_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TP73
M08035_2.00 		Homo sapiens
RCADGYHSDGRCWDG
CHWGYCHSDRCHTGY		 ChIP-seq
Chen et al.(2011)
GSE15704_TP73_rapamycin 		0.964 0.964
TP73
M08036_2.00 		Homo sapiens
DRRCAWGYHCWGRCWTGYH
DRCAWGYCWGDRCWTGYYH		 ChIP-seq
Chen et al.(2011)
GSE15704_TP73_vehicle 		0.964 0.964
TP73
M08037_2.00 		Homo sapiens
RCMDGYBCHNDCHKG
CMDGHNDGVRCHKGY		 ChIP-seq
Chen et al.(2011)
GSE18650_TP73 		0.964 0.964
TP73
M09336_2.00 		Homo sapiens
NDDCHWGYYCMRRCHTGYH
DRCADGYYKGRRCWDGHHN		 Misc
Kulakovskiy et al.(2013)
P73_HUMAN.H11MO.0.A 		0.964 0.964
TP73
M11196_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P73_Q6 		0.964 0.964
Trp73
M03438_2.00 		Mus musculus
DRCAWGTYNNRACAYGYH
DRCRTGTYNNRACWTGYH		 SELEX
Jolma et al.(2013)
Tp73_1 		0.954 0.954
Trp73
M09339_2.00 		Mus musculus
NDDCHWGYYCMRRCHTGYH
DRCADGYYKGRRCWDGHHN		 Misc
Kulakovskiy et al.(2013)
P73_MOUSE.H11MO.0.B 		0.954 0.954
Trp63
M09338_2.00 		Mus musculus
DRCAWGYHCHRRCHTGYHN
NDRCADGYYDGDRCWTGYH		 Misc
Kulakovskiy et al.(2013)
P63_MOUSE.H11MO.0.B 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009749 p53 115 311

Links

Other p53 family TFs
Other Geospiza fortis TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TP73 Taeniopygia guttata ENSTGUG00000002743 I 1.000
ENSFALG00000009625 Ficedula albicollis ENSFALG00000009625 I 0.995
Afo_R003301 Aptenodytes forsteri Afo_R003301 I 0.990
Alligator_sinensis_CCG011609.1 Alligator sinensis Alligator_sinensis_CCG011609.1 I 0.990
TP73 Anolis carolinensis ENSACAG00000001622 I 0.985
ENSAPLG00000003880 Anas platyrhynchos ENSAPLG00000003880 I 0.985
TP73 Erinaceus europaeus ENSEEUG00000013128 I 0.985
Aan_R005960 Calypte anna Aan_R005960 I 0.985
Cmyd_10015921 Chelonia mydas Cmyd_10015921 I 0.980
Pvit_15794 Pogona vitticeps Pvit_15794 I 0.980
TP73 Tursiops truncatus ENSTTRG00000003435 I 0.979
TP73 Bos taurus ENSBTAG00000005812 I 0.974
TP73 Gallus gallus ENSGALG00000001006 I 0.974
TP73 Procavia capensis ENSPCAG00000000703 I 0.974
ENSPSIG00000004164 Pelodiscus sinensis ENSPSIG00000004164 I 0.974
ENSP00000367545-D1 Bos grunniens ENSP00000367545-D1 I 0.974
TP73 Equus caballus ENSECAG00000000771 I 0.970
ENSSHAG00000005668 Sarcophilus harrisii ENSSHAG00000005668 I 0.970
TP73 Canis familiaris ENSCAFG00000019489 I 0.969
TP73 Gorilla gorilla ENSGGOG00000015559 I 0.969
TP73 Loxodonta africana ENSLAFG00000007013 I 0.969
ENSMPUG00000007407 Mustela putorius furo ENSMPUG00000007407 I 0.969
TP73 Felis catus ENSFCAG00000011627 I 0.964
TP73 Homo sapiens ENSG00000078900 D 0.964
TP73 Macaca mulatta ENSMMUG00000016569 I 0.964
ENSOARG00000015833 Ovis aries ENSOARG00000015833 I 0.964
TP73 Otolemur garnettii ENSOGAG00000006041 I 0.964
ENSP00000367545 Macaca fascicularis ENSP00000367545 I 0.964
TP73 Cavia porcellus ENSCPOG00000010908 I 0.959
ENSCSAG00000000724 Chlorocebus sabaeus ENSCSAG00000000724 I 0.959
TP73 Meleagris gallopavo ENSMGAG00000001562 I 0.959
ENSPANG00000010294 Papio anubis ENSPANG00000010294 I 0.959
Tp73 Rattus norvegicus ENSRNOG00000024707 I 0.959
Trp73 Mus musculus ENSMUSG00000029026 D 0.954
ENSSTOG00000029194 Ictidomys tridecemlineatus ENSSTOG00000029194 I 0.954
tp73 Xenopus tropicalis XB-GENE-482857 I 0.954
Ogr15303 Ophisaurus gracilis Ogr15303 I 0.953
ENSLACG00000019068 Latimeria chalumnae ENSLACG00000019068 I 0.944
ENSLOCG00000005255 Lepisosteus oculatus ENSLOCG00000005255 I 0.944
ENSONIG00000002106 Oreochromis niloticus ENSONIG00000002106 I 0.939
ENSPFOG00000010828 Poecilia formosa ENSPFOG00000010828 I 0.934
Brh_R004866 Buceros rhinoceros Brh_R004866 I 0.934
tp73 Danio rerio ENSDARG00000017953 I 0.923
tp73 Gasterosteus aculeatus ENSGACG00000006547 I 0.923
tp73 Oryzias latipes ENSORLG00000004402 I 0.923
tp73 Tetraodon nigroviridis ENSTNIG00000011978 I 0.923
tp73 Takifugu rubripes ENSTRUG00000014931 I 0.923
TP73 Pteropus vampyrus ENSPVAG00000008937 I 0.921
ENSAMXG00000013958 Astyanax mexicanus ENSAMXG00000013958 I 0.913
ENSPPYG00000001963 Pongo abelii ENSPPYG00000001963 I 0.903
TP73 Sus scrofa ENSSSCG00000025685 I 0.889
ENSLOCG00000005148 Lepisosteus oculatus ENSLOCG00000005148 I 0.862
ENSAMEG00000000763 Ailuropoda melanoleuca ENSAMEG00000000763 I 0.857
ENSAMXG00000004843 Astyanax mexicanus ENSAMXG00000004843 I 0.857
ENSAPLG00000012917 Anas platyrhynchos ENSAPLG00000012917 I 0.857
TP63 Bos taurus ENSBTAG00000015460 I 0.857
TP63 Canis familiaris ENSCAFG00000013961 I 0.857
TP63 Callithrix jacchus ENSCJAG00000014256 I 0.857
TP63 Cavia porcellus ENSCPOG00000014770 I 0.857
tp63 Danio rerio ENSDARG00000044356 I 0.857
TP63 Dasypus novemcinctus ENSDNOG00000016582 I 0.857
Trp63 Dipodomys ordii ENSDORG00000002061 I 0.857
TP63 Equus caballus ENSECAG00000018546 I 0.857
ENSFALG00000007393 Ficedula albicollis ENSFALG00000007393 I 0.857
TP63 Felis catus ENSFCAG00000000790 I 0.857
TP63 Homo sapiens ENSG00000073282 D 0.857
ENSGACG00000013629 Gasterosteus aculeatus ENSGACG00000013629 I 0.857
TP63 Gallus gallus ENSGALG00000007324 I 0.857
TP63 Gorilla gorilla ENSGGOG00000005113 I 0.857
ENSLACG00000014214 Latimeria chalumnae ENSLACG00000014214 I 0.857
TP63 Loxodonta africana ENSLAFG00000031461 I 0.857
TP63 Meleagris gallopavo ENSMGAG00000007535 I 0.857
TP63 Microcebus murinus ENSMICG00000005240 I 0.857
TP63 Myotis lucifugus ENSMLUG00000015597 I 0.857
TP63 Macaca mulatta ENSMMUG00000016466 I 0.857
TP63 Monodelphis domestica ENSMODG00000015060 I 0.857
ENSMPUG00000003438 Mustela putorius furo ENSMPUG00000003438 I 0.857
Trp63 Mus musculus ENSMUSG00000022510 D 0.857
ENSNLEG00000006723 Nomascus leucogenys ENSNLEG00000006723 I 0.857
TP63 Ornithorhynchus anatinus ENSOANG00000013795 I 0.857
ENSOARG00000020478 Ovis aries ENSOARG00000020478 I 0.857
TP63 Oryctolagus cuniculus ENSOCUG00000016465 I 0.857
TP63 Otolemur garnettii ENSOGAG00000003838 I 0.857
ENSONIG00000019325 Oreochromis niloticus ENSONIG00000019325 I 0.857
tp63 Oryzias latipes ENSORLG00000015665 I 0.857
ENSPANG00000006656 Papio anubis ENSPANG00000006656 I 0.857
TP63 Procavia capensis ENSPCAG00000005011 I 0.857
ENSPPYG00000014401 Pongo abelii ENSPPYG00000014401 I 0.857
ENSPSIG00000016009 Pelodiscus sinensis ENSPSIG00000016009 I 0.857
TP63 Pan troglodytes ENSPTRG00000015733 I 0.857
TP63 Pteropus vampyrus ENSPVAG00000009056 I 0.857
Tp63 Rattus norvegicus ENSRNOG00000001924 I 0.857
TP63 Sus scrofa ENSSSCG00000025592 I 0.857
ENSSTOG00000013771 Ictidomys tridecemlineatus ENSSTOG00000013771 I 0.857
TP63 Taeniopygia guttata ENSTGUG00000009377 I 0.857
tp63 Tetraodon nigroviridis ENSTNIG00000013774 I 0.857
tp63 Takifugu rubripes ENSTRUG00000003420 I 0.857
ENSTSYG00000003709 Tarsius syrichta ENSTSYG00000003709 I 0.857
TP63 Tursiops truncatus ENSTTRG00000011638 I 0.857
Aan_R013385 Calypte anna Aan_R013385 I 0.857
Afo_R010233 Aptenodytes forsteri Afo_R010233 I 0.857
ENSP00000264731-D1 Bos grunniens ENSP00000264731-D1 I 0.857
ENSP00000264731 Macaca fascicularis ENSP00000264731 I 0.857
Gfo_R004420 Geospiza fortis Gfo_R004420 I 0.857
Myotis_brandtii_Tp63_10011644 Myotis brandtii Myotis_brandtii_Tp63_10011644 I 0.857
Pvit_07832 Pogona vitticeps Pvit_07832 I 0.857
tp63 Xenopus tropicalis XB-GENE-479868 I 0.857
tp63.L Xenopus laevis XB-GENE-865317 I 0.857
Brh_R005208 Buceros rhinoceros Brh_R005208 I 0.855
Tal_R007660 Tyto alba Tal_R007660 I 0.855
ENSGMOG00000000413 Gadus morhua ENSGMOG00000000413 I 0.852
ENSPFOG00000000910 Poecilia formosa ENSPFOG00000000910 I 0.852
TP63 Sorex araneus ENSSARG00000012752 I 0.852
ENSXMAG00000016425 Xiphophorus maculatus ENSXMAG00000016425 I 0.852
ENSACAG00000002961 Anolis carolinensis ENSACAG00000002961 I 0.848
ENSAMEG00000009237 Ailuropoda melanoleuca ENSAMEG00000009237 I 0.841
TP63 Choloepus hoffmanni ENSCHOG00000010497 I 0.827
ENSXMAG00000017360 Xiphophorus maculatus ENSXMAG00000017360 I 0.796
ENSMEUG00000000762 Macropus eugenii ENSMEUG00000000762 I 0.744
ENSCSAG00000009062 Chlorocebus sabaeus ENSCSAG00000009062 I 0.719
ENSPMAG00000009535 Petromyzon marinus ENSPMAG00000009535 I 0.719
Ogr07265 Ophisaurus gracilis Ogr07265 I 0.719
ENSACAG00000022533 Anolis carolinensis ENSACAG00000022533 I 0.708