Alligator_sinensis_CCG007145.2 (Alligator sinensis)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 Alligator_sinensis_CCG007145.2 T312138_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.894 0.894
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.886 0.886
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG007145.2 Paired box 34 157

Links

Other Paired box family TFs
Other Alligator sinensis TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG007145.1 Alligator sinensis Alligator_sinensis_CCG007145.1 I 0.943
Cmyd_10010530 Chelonia mydas Cmyd_10010530 I 0.943
Ogr06456 Ophisaurus gracilis Ogr06456 I 0.943
PAX3 Callithrix jacchus ENSCJAG00000012088 I 0.927
PAX3 Homo sapiens ENSG00000135903 D 0.927
PAX3 Macaca mulatta ENSMMUG00000020409 I 0.927
PAX7 Homo sapiens ENSG00000009709 D 0.894
Pax7 Dipodomys ordii ENSDORG00000011854 I 0.894
ENSMODG00000025571 Monodelphis domestica ENSMODG00000025571 I 0.894
PAX7 Procavia capensis ENSPCAG00000005303 I 0.894
ENSTNIG00000005618 Tetraodon nigroviridis ENSTNIG00000005618 I 0.894
ENSTRUG00000007849 Takifugu rubripes ENSTRUG00000007849 I 0.894
Alligator_sinensis_CCG006492.1 Alligator sinensis Alligator_sinensis_CCG006492.1 I 0.894
ENSGMOG00000003366 Gadus morhua ENSGMOG00000003366 I 0.886
ENSORLG00000019389 Oryzias latipes ENSORLG00000019389 I 0.837
SMAR008441 Strigamia maritima SMAR008441 I 0.805
ACEP15310 Atta cephalotes ACEP15310 I 0.804
SMAR015380 Strigamia maritima SMAR015380 I 0.789
ACEP15304 Atta cephalotes ACEP15304 I 0.777
GL14130 Drosophila persimilis FBgn0151735 I 0.756
ACUA026425 Anopheles culicifacies ACUA026425 I 0.754
AMIN006553 Anopheles minimus AMIN006553 I 0.754
RPRC008887 Rhodnius prolixus RPRC008887 I 0.752
Cflo_06473--XP_394848.3_APIME Camponotus floridanus Cflo_06473--XP_394848.3_APIME I 0.748
CpipJ_CPIJ006494 Culex pipiens CpipJ_CPIJ006494 I 0.724
CPIJ006494 Culex quinquefasciatus CPIJ006494 I 0.724
ISCW003096 Ixodes scapularis ISCW003096 I 0.715
AFAF004706 Anopheles farauti AFAF004706 I 0.715
AFUN002668 Anopheles funestus AFUN002668 I 0.715
SINV15897 Solenopsis invicta SINV15897 I 0.707
SPU_006683 Strongylocentrotus purpuratus SPU_006683 I 0.707