Ppa-mbr-1 (Pristionchus pacificus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 PPA15862 T314048_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mbr-1
M00707_2.00 		Caenorhabditis elegans
NRNGGGCCDN
NHGGCCCNYN		 PBM
Narasimhan et al.(2015)
pTH10031 		0.810 0.810
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA15862 Pipsqueak 136 178

Links

Other Pipsqueak family TFs
Other Pristionchus pacificus TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGOC_0000231801 Cylicostephanus goldi CGOC_0000231801 I 0.900
NECAME_06709 Necator americanus NECAME_06709 I 0.900
OESDEN_00123 Oesophagostomum dentatum OESDEN_00123 I 0.900
ANCDUO_12249 Ancylostoma duodenale ANCDUO_12249 I 0.857
ANCDUO_25789 Ancylostoma duodenale ANCDUO_25789 I 0.857
DICVIV_13091 Dictyocaulus viviparus DICVIV_13091 I 0.857
nRc.2.0.1.g13586 Romanomermis culicivorax nRc.2.0.1.g13586 N 0.857
TELCIR_00496 Teladorsagia circumcincta TELCIR_00496 I 0.857
mbr-1 Caenorhabditis elegans WBGene00011315 D 0.810