Gfo_R002325 (Geospiza fortis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Gfo_R002325 T314438_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002325 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Geospiza fortis TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000186 Ailuropoda melanoleuca ENSAMEG00000000186 I 1.000
ENSAPLG00000003032 Anas platyrhynchos ENSAPLG00000003032 I 1.000
ENSBTAG00000004029 Bos taurus ENSBTAG00000004029 I 1.000
ENSCAFG00000008905 Canis familiaris ENSCAFG00000008905 I 1.000
ENSCHOG00000001981 Choloepus hoffmanni ENSCHOG00000001981 I 1.000
ENSCJAG00000016484 Callithrix jacchus ENSCJAG00000016484 I 1.000
ENSCPOG00000005739 Cavia porcellus ENSCPOG00000005739 I 1.000
ENSCSAG00000006043 Chlorocebus sabaeus ENSCSAG00000006043 I 1.000
ENSECAG00000013517 Equus caballus ENSECAG00000013517 I 1.000
ENSETEG00000015066 Echinops telfairi ENSETEG00000015066 I 1.000
ENSFALG00000008484 Ficedula albicollis ENSFALG00000008484 I 1.000
ENSFCAG00000028121 Felis catus ENSFCAG00000028121 I 1.000
LCOR Homo sapiens ENSG00000196233 I 1.000
ENSGALG00000023649 Gallus gallus ENSGALG00000023649 I 1.000
ENSGGOG00000026110 Gorilla gorilla ENSGGOG00000026110 I 1.000
ENSLAFG00000014271 Loxodonta africana ENSLAFG00000014271 I 1.000
ENSMGAG00000009953 Meleagris gallopavo ENSMGAG00000009953 D 1.000
ENSMICG00000007572 Microcebus murinus ENSMICG00000007572 I 1.000
ENSMLUG00000000494 Myotis lucifugus ENSMLUG00000000494 I 1.000
ENSMMUG00000010425 Macaca mulatta ENSMMUG00000010425 I 1.000
ENSMODG00000004531 Monodelphis domestica ENSMODG00000004531 I 1.000
Lcor Mus musculus ENSMUSG00000025019 I 1.000
ENSNLEG00000013648 Nomascus leucogenys ENSNLEG00000013648 I 1.000
ENSOARG00000008725 Ovis aries ENSOARG00000008725 I 1.000
ENSOGAG00000008137 Otolemur garnettii ENSOGAG00000008137 I 1.000
ENSOPRG00000014745 Ochotona princeps ENSOPRG00000014745 I 1.000
ENSPCAG00000007084 Procavia capensis ENSPCAG00000007084 I 1.000
ENSPSIG00000009179 Pelodiscus sinensis ENSPSIG00000009179 I 1.000
LCOR Pan troglodytes ENSPTRG00000002800 I 1.000
ENSPVAG00000003364 Pteropus vampyrus ENSPVAG00000003364 I 1.000
Lcor Rattus norvegicus ENSRNOG00000042679 I 1.000
ENSSARG00000008230 Sorex araneus ENSSARG00000008230 I 1.000
ENSSHAG00000018667 Sarcophilus harrisii ENSSHAG00000018667 I 1.000
ENSSSCG00000010511 Sus scrofa ENSSSCG00000010511 I 1.000
ENSSTOG00000010808 Ictidomys tridecemlineatus ENSSTOG00000010808 I 1.000
ENSTBEG00000005837 Tupaia belangeri ENSTBEG00000005837 I 1.000
ENSTGUG00000009834 Taeniopygia guttata ENSTGUG00000009834 I 1.000
ENSTTRG00000009856 Tursiops truncatus ENSTTRG00000009856 I 1.000
ENSVPAG00000007583 Vicugna pacos ENSVPAG00000007583 I 1.000
Aan_R012556 Calypte anna Aan_R012556 I 1.000
Afo_R002709 Aptenodytes forsteri Afo_R002709 I 1.000
Alligator_sinensis_CCG020164.1 Alligator sinensis Alligator_sinensis_CCG020164.1 I 1.000
Brh_R001506 Buceros rhinoceros Brh_R001506 I 1.000
Cmyd_10003742 Chelonia mydas Cmyd_10003742 I 1.000
ENSBTAP00000005261-D1 Bos grunniens ENSBTAP00000005261-D1 I 1.000
ENSP00000360138 Macaca fascicularis ENSP00000360138 I 1.000
Myotis_brandtii_LCOR_10025723 Myotis brandtii Myotis_brandtii_LCOR_10025723 I 1.000
Ogr16502 Ophisaurus gracilis Ogr16502 I 1.000
Pvit_17823 Pogona vitticeps Pvit_17823 I 1.000
Tal_R010723 Tyto alba Tal_R010723 I 1.000
ENSLACG00000001265 Latimeria chalumnae ENSLACG00000001265 I 0.978
ENSLOCG00000012823 Lepisosteus oculatus ENSLOCG00000012823 I 0.978
ENSACAG00000012432 Anolis carolinensis ENSACAG00000012432 D 0.956
lcorl Xenopus tropicalis XB-GENE-995017 D 0.956
lcor Takifugu rubripes ENSTRUG00000006194 I 0.939
lcor Danio rerio ENSDARG00000100908 I 0.933
lcor Tetraodon nigroviridis ENSTNIG00000003614 I 0.933
ENSONIG00000000255 Oreochromis niloticus ENSONIG00000000255 I 0.911
ENSORLG00000000044 Oryzias latipes ENSORLG00000000044 D 0.911
ENSPFOG00000009902 Poecilia formosa ENSPFOG00000009902 I 0.911
ENSXMAG00000005637 Xiphophorus maculatus ENSXMAG00000005637 I 0.911
ENSTRUG00000008704 Takifugu rubripes ENSTRUG00000008704 I 0.909
ENSAMXG00000021599 Astyanax mexicanus ENSAMXG00000021599 I 0.889
ENSONIG00000018331 Oreochromis niloticus ENSONIG00000018331 I 0.889
ENSGMOG00000018278 Gadus morhua ENSGMOG00000018278 I 0.844
ENSPFOG00000013017 Poecilia formosa ENSPFOG00000013017 I 0.844
ENSXMAG00000002515 Xiphophorus maculatus ENSXMAG00000002515 I 0.844
ENSGACG00000007469 Gasterosteus aculeatus ENSGACG00000007469 D 0.841
ENSORLG00000007805 Oryzias latipes ENSORLG00000007805 D 0.822
ENSPMAG00000003112 Petromyzon marinus ENSPMAG00000003112 I 0.822
LCORL Choloepus hoffmanni ENSCHOG00000006922 D 0.800
LCORL Homo sapiens ENSG00000178177 D 0.800
LCORL Tupaia belangeri ENSTBEG00000012926 I 0.800
Myotis_brandtii_LCORL_10024398 Myotis brandtii Myotis_brandtii_LCORL_10024398 I 0.800