Carubv10012331m.g (Capsella rubella)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 Carubv10012331m.g T315988_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012331m PLATZ 64 135

Links

Other PLATZ family TFs
Other Capsella rubella TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.8320s0001 Capsella grandiflora Cagra.8320s0001 N 0.986
AT1G43000 Arabidopsis thaliana AT1G43000 N 0.861
Al_scaffold_0001_3792 Arabidopsis lyrata Al_scaffold_0001_3792 N 0.847
Bostr.12302s0015 Boechera stricta Bostr.12302s0015 N 0.833
Lus10023411.g Linum usitatissimum Lus10023411.g N 0.792
Bra025865 Brassica rapa Bra025865 N 0.750
scaffold_102351.1 Arabidopsis lyrata scaffold_102351.1 N 0.750
TCM_034802 Theobroma cacao TCM_034802 N 0.750
VIT_18s0122g00320 Vitis vinifera VIT_18s0122g00320 N 0.750
mgf004069m Mimulus guttatus mgf004069m N 0.750
mgf010773m Mimulus guttatus mgf010773m N 0.750
Bostr.7128s0691 Boechera stricta Bostr.7128s0691 N 0.750
Cagra.7414s0001 Capsella grandiflora Cagra.7414s0001 N 0.750
Carubv10009696m.g Capsella rubella Carubv10009696m.g N 0.750
Thhalv10008598m.g Eutrema salsugineum Thhalv10008598m.g N 0.750
PK14253.1 Cannabis sativa PK14253.1 N 0.750
AT1G21000 Arabidopsis thaliana AT1G21000 N 0.736
AT1G76590 Arabidopsis thaliana AT1G76590 N 0.736
Bo5g030950 Brassica oleracea Bo5g030950 N 0.736
Bo6g120700 Brassica oleracea Bo6g120700 N 0.736
Bo7g059750 Brassica oleracea Bo7g059750 N 0.736
Bra012263 Brassica rapa Bra012263 N 0.736
Bra015731 Brassica rapa Bra015731 N 0.736
Bra016441 Brassica rapa Bra016441 N 0.736
fgenesh2_kg.2__1947__AT1G76590.1 Arabidopsis lyrata fgenesh2_kg.2__1947__AT1G76590.1 N 0.736
PGSC0003DMG400009931 Solanum tuberosum PGSC0003DMG400009931 N 0.736
POPTR_0002s00430 Populus trichocarpa POPTR_0002s00430 N 0.736
XM_002306973.1 Populus trichocarpa POPTR_0005s28040 N 0.736
30170.m013811 Ricinus communis 30170.m013811 N 0.736
cassava13654.valid.m1 Manihot esculenta cassava13654.valid.m1 N 0.736
cassava7406.valid.m1 Manihot esculenta cassava7406.valid.m1 N 0.736
Bostr.20129s0097 Boechera stricta Bostr.20129s0097 N 0.736
Cagra.2281s0027 Capsella grandiflora Cagra.2281s0027 N 0.736
Carubv10020852m.g Capsella rubella Carubv10020852m.g N 0.736
Ciclev10002292m.g Citrus clementina Ciclev10002292m.g N 0.736
Eucgr.F01950 Eucalyptus grandis Eucgr.F01950 N 0.736
gene29145-v1.0-hybrid Fragaria vesca gene29145-v1.0-hybrid N 0.736
Lus10040292.g Linum usitatissimum Lus10040292.g N 0.736
orange1.1g025742m.g Citrus sinensis orange1.1g025742m.g N 0.736
SapurV1A.0554s0100 Salix purpurea SapurV1A.0554s0100 N 0.736
Thhalv10019067m.g Eutrema salsugineum Thhalv10019067m.g N 0.736
Bo8g070540 Brassica oleracea Bo8g070540 N 0.722
GSMUA_Achr9G12280_001 Musa acuminata GSMUA_Achr9G12280_001 N 0.722
GSMUA_AchrUn_randomG24560_001 Musa acuminata GSMUA_AchrUn_randomG24560_001 N 0.722
Lus10000952.g Linum usitatissimum Lus10000952.g N 0.722
Lus10002700.g Linum usitatissimum Lus10002700.g N 0.722
MDP0000133007 Malus domestica MDP0000133007 N 0.722
MDP0000133008 Malus domestica MDP0000133008 N 0.722
MDP0000225862 Malus domestica MDP0000225862 N 0.722
SapurV1A.0016s0060 Salix purpurea SapurV1A.0016s0060 N 0.722
Bo6g084850 Brassica oleracea Bo6g084850 N 0.708
Bra003715 Brassica rapa Bra003715 N 0.708
GSMUA_Achr6G36360_001 Musa acuminata GSMUA_Achr6G36360_001 N 0.708