18547_YNL216W (Saccharomyces paradoxus)
Rap1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09197 (Rap1-DNA-bind) IPR015280 18547_YNL216W T316933_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP1
M00378_2.00 		Saccharomyces cerevisiae
RGRTGKAYGG
CCRTMCAYCY		 PBM
Berger et al.(2006)
Rap1 		0.756 0.756
RAP1
M01564_2.00 		Saccharomyces cerevisiae
NGGTGYVNDD
HHNBRCACCN		 PBM
Zhu et al.(2009)
Rap1 		0.756 0.756
RAP1
M07493_2.00 		Saccharomyces cerevisiae
TGTWYGGGTG
CACCCRWACA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0359.1 		0.756 0.756
RAP1
M07556_2.00 		Saccharomyces cerevisiae
RTGYRYGGGTG
CACCCRYRCAY		 ChIP-exo
Rhee et al.(2011)
Rap1_1 		0.756 0.756
RAP1
M07557_2.00 		Saccharomyces cerevisiae
GTGTGKGTGTG
CACACMCACAC		 ChIP-exo
Rhee et al.(2011)
Rap1_2 		0.756 0.756
RAP1
M07558_2.00 		Saccharomyces cerevisiae
GGTGTGGTGTG
CACACCACACC		 ChIP-exo
Rhee et al.(2011)
Rap1_3 		0.756 0.756
RAP1
M08599_2.00 		Saccharomyces cerevisiae
DRTGTRYGGGTKY
RMACCCRYACAYH		 Misc
DeBoer et al.(2011)
YNL216W_254 		0.756 0.756
RAP1
M11214_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RAP1_03 		0.756 0.756
RAP1
M11215_2.00 		Saccharomyces cerevisiae
RRTGTMTGGGTKYD
HRMACCCAKACAYY		 Transfac
Matys et al.(2006)
F$RAP1_C 		0.756 0.756
RAP1
M11216_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RAP1_Q6 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
18547_YNL216W Rap1 296 430
18547_YNL216W Rap1 454 585

Links

Other Rap1 family TFs
Other Saccharomyces paradoxus TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SU7_2890 Saccharomyces arboricola SU7_2890 I 0.830
RAP1 Saccharomyces cerevisiae YNL216W D 0.828
20457_YNL216W Saccharomyces bayanus 20457_YNL216W I 0.766
18116_YNL216W Saccharomyces mikatae 18116_YNL216W I 0.761