L898_g21445 (Steinernema monticolum)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 L898_g21445 T319217_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.651 0.288
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.651 0.288
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.651 0.288
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.651 0.288
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.650 0.288
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.650 0.288
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.650 0.288
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.650 0.288
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.650 0.288
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.650 0.288
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.650 0.288
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.650 0.288
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.650 0.288
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.650 0.288
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.650 0.288
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g21445.t1 RFX 493 558

Links

Other RFX family TFs
Other Steinernema monticolum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CpipJ_CPIJ004011 Culex pipiens CpipJ_CPIJ004011 I 0.653
AAEL018287 Aedes aegypti AAEL018287 I 0.653
CPIJ004011 Culex quinquefasciatus CPIJ004011 I 0.653
CJA41991 Caenorhabditis japonica CJA41991 I 0.651
ENSAMXG00000021077 Astyanax mexicanus ENSAMXG00000021077 I 0.651
RFX3 Dasypus novemcinctus ENSDNOG00000018668 I 0.651
RFX3 Gorilla gorilla ENSGGOG00000003805 I 0.651
Rfx2 Mus musculus ENSMUSG00000024206 D 0.651
ENSPANG00000025143 Papio anubis ENSPANG00000025143 I 0.651
Rfx2 Rattus norvegicus ENSRNOG00000045846 I 0.651
ENSSHAG00000003775 Sarcophilus harrisii ENSSHAG00000003775 I 0.651
RFX1 Anolis carolinensis ENSACAG00000015671 D 0.650
ENSAMEG00000013075 Ailuropoda melanoleuca ENSAMEG00000013075 I 0.650
RFX1 Canis familiaris ENSCAFG00000016511 I 0.650
RFX1 Callithrix jacchus ENSCJAG00000004970 I 0.650
RFX1 Cavia porcellus ENSCPOG00000010089 I 0.650
rfx1a Danio rerio ENSDARG00000005883 I 0.650
Rfx1 Dipodomys ordii ENSDORG00000016506 I 0.650
RFX1 Equus caballus ENSECAG00000016589 I 0.650
RFX1 Felis catus ENSFCAG00000003721 I 0.650
RFX1 Homo sapiens ENSG00000132005 D 0.650
RFX1 Gasterosteus aculeatus ENSGACG00000012429 I 0.650
RFX1 Gorilla gorilla ENSGGOG00000000385 I 0.650
ENSLACG00000022433 Latimeria chalumnae ENSLACG00000022433 I 0.650
RFX1 Loxodonta africana ENSLAFG00000010160 I 0.650
ENSMEUG00000009014 Macropus eugenii ENSMEUG00000009014 I 0.650
RFX1 Microcebus murinus ENSMICG00000012036 I 0.650
RFX1 Myotis lucifugus ENSMLUG00000013002 I 0.650
RFX1 Macaca mulatta ENSMMUG00000018966 I 0.650
RFX1 Monodelphis domestica ENSMODG00000012044 I 0.650
ENSMPUG00000003132 Mustela putorius furo ENSMPUG00000003132 I 0.650
Rfx1 Mus musculus ENSMUSG00000031706 D 0.650
ENSNLEG00000013294 Nomascus leucogenys ENSNLEG00000013294 I 0.650
RFX1 Ornithorhynchus anatinus ENSOANG00000015701 I 0.650
RFX1 Otolemur garnettii ENSOGAG00000007203 I 0.650
ENSONIG00000002158 Oreochromis niloticus ENSONIG00000002158 I 0.650
RFX1 Oryzias latipes ENSORLG00000010273 I 0.650
ENSPANG00000009789 Papio anubis ENSPANG00000009789 I 0.650
RFX1 Procavia capensis ENSPCAG00000010006 I 0.650
ENSPFOG00000012660 Poecilia formosa ENSPFOG00000012660 I 0.650
ENSPPYG00000009631 Pongo abelii ENSPPYG00000009631 I 0.650
ENSPSIG00000016113 Pelodiscus sinensis ENSPSIG00000016113 I 0.650
RFX1 Pan troglodytes ENSPTRG00000010574 I 0.650
RFX1 Pteropus vampyrus ENSPVAG00000017549 I 0.650
Rfx1 Rattus norvegicus ENSRNOG00000006049 I 0.650
ENSSHAG00000009998 Sarcophilus harrisii ENSSHAG00000009998 I 0.650
RFX1 Sus scrofa ENSSSCG00000013764 I 0.650
ENSSTOG00000025432 Ictidomys tridecemlineatus ENSSTOG00000025432 I 0.650
RFX1 Tetraodon nigroviridis ENSTNIG00000003294 D 0.650
RFX1 Takifugu rubripes ENSTRUG00000012387 I 0.650
RFX3 Tursiops truncatus ENSTTRG00000003709 I 0.650
RFX1 Tursiops truncatus ENSTTRG00000008377 I 0.650
ENSXMAG00000014267 Xiphophorus maculatus ENSXMAG00000014267 I 0.650
TC011734 Tribolium castaneum TC011734 I 0.650
YQE_07939 Dendroctonus ponderosae YQE_07939 I 0.650
Aan_R014781 Calypte anna Aan_R014781 I 0.650
Alligator_sinensis_CCG017904.1 Alligator sinensis Alligator_sinensis_CCG017904.1 I 0.650
Cmyd_10002788 Chelonia mydas Cmyd_10002788 I 0.650
ENSP00000254325-D1 Bos grunniens ENSP00000254325-D1 I 0.650
ENSP00000254325 Macaca fascicularis ENSP00000254325 I 0.650
Myotis_brandtii_RFX1_10009249 Myotis brandtii Myotis_brandtii_RFX1_10009249 I 0.650
Ogr03659 Ophisaurus gracilis Ogr03659 I 0.650
Pvit_11631 Pogona vitticeps Pvit_11631 I 0.650
LDEC011807 Leptinotarsa decemlineata LDEC011807 I 0.650
XP_002940666 Xenopus tropicalis XP_002940666 I 0.650