CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
MhA1_Contig405.frz3.gene22
(
Meloidogyne hapla
)
Runt
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00853 (Runt)
IPR013524
MhA1_Contig405.frz3.gene22
T319826_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig405.frz3.gene22
Runt
20
129
EALRRISGQCRLQNTCHSDVFCSRIPAHWRSNKSLPTPFIILALCPIPDGTRVCVSAGNDENFCADVKNNTAEFIGQMARFSDLRFVGKSGRGKNFNLSITIFTIPLTQA
Links
Other
Runt
family TFs
Other
Meloidogyne hapla
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc03548
Meloidogyne incognita
Minc03548
N
0.917
Minc04853
Meloidogyne incognita
Minc04853
N
0.917
maker-nMf.1.1.scaf09276-snap-gene-0.5
Meloidogyne floridensis
maker-nMf.1.1.scaf09276-snap-gene-0.5
N
0.784
Minc18686
Meloidogyne incognita
Minc18686
N
0.729