POPTR_0009s16780 (Populus trichocarpa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 POPTR_0009s16780 T320746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s16780.1 RWP-RK 82 130

Links

Other RWP-RK family TFs
Other Populus trichocarpa TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.7__555__AT4G35270.1 Arabidopsis lyrata fgenesh2_kg.7__555__AT4G35270.1 I 0.763
GLYMA02G48080 Glycine max GLYMA02G48080 I 0.763
GLYMA04G00210 Glycine max GLYMA04G00210 I 0.763
GLYMA06G00240 Glycine max GLYMA06G00240 I 0.763
GLYMA14G00470 Glycine max GLYMA14G00470 I 0.763
MTR_5g099060 Medicago truncatula MTR_5g099060 I 0.763
TCM_006453 Theobroma cacao TCM_006453 I 0.763
VIT_03s0038g03710 Vitis vinifera VIT_03s0038g03710 I 0.763
Ca_09832 Cicer arietinum Ca_09832 I 0.763
Carubv10004068m.g Capsella rubella Carubv10004068m.g I 0.763
Ciclev10027765m.g Citrus clementina Ciclev10027765m.g I 0.763
Gorai.008G041100 Gossypium raimondii Gorai.008G041100 I 0.763
orange1.1g004975m.g Citrus sinensis orange1.1g004975m.g I 0.763
chr2.CM0102.390.nc Lotus japonicus chr2.CM0102.390.nc I 0.763
NLP5 Arabidopsis thaliana AT1G76350 I 0.737
BGIOSGA034185 Oryza indica BGIOSGA034185 I 0.737
Bo6g120380 Brassica oleracea Bo6g120380 I 0.737
Bo7g014920 Brassica oleracea Bo7g014920 I 0.737
Bo7g061470 Brassica oleracea Bo7g061470 I 0.737
Bra002025 Brassica rapa Bra002025 I 0.737
Bra012241 Brassica rapa Bra012241 I 0.737
Bra015758 Brassica rapa Bra015758 I 0.737
BRADI4G20730 Brachypodium distachyon BRADI4G20730 I 0.737
fgenesh2_kg.2__1918__AT1G76350.1 Arabidopsis lyrata fgenesh2_kg.2__1918__AT1G76350.1 I 0.737
MLOC_13610 Hordeum vulgare MLOC_13610 I 0.737
OGLUM11G08660 Oryza glumaepatula OGLUM11G08660 I 0.737
OLONG_006342 Oryza longistaminata OLONG_006342 I 0.737
OMERI11G08010 Oryza meridionalis OMERI11G08010 I 0.737
ONIVA11G08980 Oryza nivara ONIVA11G08980 I 0.737
ORGLA11G0080000 Oryza glaberrima ORGLA11G0080000 I 0.737
ORUFI11G09500 Oryza rufipogon ORUFI11G09500 I 0.737
POPTR_0002s01060 Populus trichocarpa POPTR_0002s01060 I 0.737
POPTR_0005s27310 Populus trichocarpa POPTR_0005s27310 I 0.737
TCM_034391 Theobroma cacao TCM_034391 I 0.737
Traes_4AL_F5C91EC4A Triticum aestivum Traes_4AL_F5C91EC4A I 0.737
TRIUR3_22305 Triticum urartu TRIUR3_22305 I 0.737
30170.m014365 Ricinus communis 30170.m014365 I 0.737
mgf005725m Mimulus guttatus mgf005725m I 0.737
Bostr.20129s0072 Boechera stricta Bostr.20129s0072 I 0.737
SapurV1A.0016s0650 Salix purpurea SapurV1A.0016s0650 I 0.737
Thhalv10018128m.g Eutrema salsugineum Thhalv10018128m.g I 0.737
PK12462.1 Cannabis sativa PK12462.1 I 0.737
PGSC0003DMG401005796 Solanum tuberosum PGSC0003DMG401005796 I 0.714
GLYMA11G13390 Glycine max GLYMA11G13390 I 0.711
GLYMA12G05390 Glycine max GLYMA12G05390 I 0.711
PRUPE_ppa000933mg Prunus persica PRUPE_ppa000933mg I 0.711
PRUPE_ppa001086mg Prunus persica PRUPE_ppa001086mg I 0.711
TCM_019949 Theobroma cacao TCM_019949 I 0.711
Pm022106 Prunus mume Pm022106 I 0.711
Pm022964 Prunus mume Pm022964 I 0.711
estExt_gwp_gw1.C_1280044 Physcomitrella patens estExt_gwp_gw1.C_1280044 I 0.711
Bostr.25542s0020 Boechera stricta Bostr.25542s0020 I 0.711
Cagra.1383s0021 Capsella grandiflora Cagra.1383s0021 I 0.711
Carubv10006357m.g Capsella rubella Carubv10006357m.g I 0.711
Ciclev10018669m.g Citrus clementina Ciclev10018669m.g I 0.711
evm.TU.supercontig_9.328 Carica papaya evm.TU.supercontig_9.328 I 0.711
gene16194-v1.0-hybrid Fragaria vesca gene16194-v1.0-hybrid I 0.711
Gorai.005G126000 Gossypium raimondii Gorai.005G126000 I 0.711
MDP0000239938 Malus domestica MDP0000239938 I 0.711
MDP0000246881 Malus domestica MDP0000246881 I 0.711
MDP0000265619 Malus domestica MDP0000265619 I 0.711
orange1.1g001774m.g Citrus sinensis orange1.1g001774m.g I 0.711
SapurV1A.0374s0230 Salix purpurea SapurV1A.0374s0230 I 0.711
SapurV1A.3634s0010 Salix purpurea SapurV1A.3634s0010 I 0.711
PK00728.1 Cannabis sativa PK00728.1 I 0.711
PK27147.1 Cannabis sativa PK27147.1 I 0.711
chr3.LjT23H01.20.nc Lotus japonicus chr3.LjT23H01.20.nc I 0.711