CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Ia03655
(
Panicum virgatum
)
SAND
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01342 (SAND)
IPR000770
Pavir.Ia03655
T322267_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ia03655.1.p
SAND
561
626
LLIYKLKNGEALKQGYKRGTGIVCNCCNQEFTPSHFEEHAGMGRRRQPYRNIYTSEGVTLHKLALQ
Pavir.Ia03655.2.p
SAND
560
625
LLIYKLKNGEALKQGYKRGTGIVCNCCNQEFTPSHFEEHAGMGRRRQPYRNIYTSEGVTLHKLALQ
Pavir.Ia03655.3.p
SAND
560
625
LLIYKLKNGEALKQGYKRGTGIVCNCCNQEFTPSHFEEHAGMGRRRQPYRNIYTSEGVTLHKLALQ
Links
Other
SAND
family TFs
Other
Panicum virgatum
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si034123m.g
Setaria italica
Si034123m.g
N
0.987
Pavir.Ib01291
Panicum virgatum
Pavir.Ib01291
N
0.986
BRADI1G66400
Brachypodium distachyon
BRADI1G66400
N
0.848