Bo3g141480 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo3g141480 T322432_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.958 0.880
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.945 0.867
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.945 0.867
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g141480.1 SBP 136 210

Links

Other SBP family TFs
Other Brassica oleracea TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra010949 Brassica rapa Bra010949 I 0.984
Bra030040 Brassica rapa Bra030040 I 0.981
Bo5g051980 Brassica oleracea Bo5g051980 I 0.980
Bo7g049950 Brassica oleracea Bo7g049950 I 0.977
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.975
Bra030041 Brassica rapa Bra030041 I 0.969
Bo7g049940 Brassica oleracea Bo7g049940 I 0.969
Bra032823 Brassica rapa Bra032823 I 0.965
Bo5g051970 Brassica oleracea Bo5g051970 I 0.965
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.964
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.964
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.964
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.960
SPL10 Arabidopsis thaliana AT1G27370 D 0.958
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.956
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.956
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.954
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.954
Ca_08506 Cicer arietinum Ca_08506 I 0.948
SPL11 Arabidopsis thaliana AT1G27360 D 0.945
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.937
PK16953.1 Cannabis sativa PK16953.1 N 0.904
MDP0000155354 Malus domestica MDP0000155354 N 0.903
Pm007020 Prunus mume Pm007020 N 0.903
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.902
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.902
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.898
Bra032822 Brassica rapa Bra032822 I 0.895