BRADI3G16040 (Brachypodium distachyon)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 BRADI3G16040 T323793_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G16040.1 Sigma 70 292 362

Links

Other Sigma 70 family TFs
Other Brachypodium distachyon TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32229 Aegilops tauschii F775_32229 N 0.972
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.972
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.972
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.972
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.964
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.958
OBART08G03910 Oryza barthii OBART08G03910 N 0.958
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.958
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.958
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.958
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.958
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.958
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.958
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.958
OS08G0163400 Oryza sativa OS08G0163400 N 0.958
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.958
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.944
OB08G14150 Oryza brachyantha OB08G14150 N 0.944
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.944
Si013608m.g Setaria italica Si013608m.g N 0.944
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.944
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.930
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.930
SIGA Arabidopsis thaliana AT1G64860 N 0.817
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.817
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.817
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.817
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.817
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.817
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.817
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.817
MDP0000934360 Malus domestica MDP0000934360 N 0.817
MDP0000939377 Malus domestica MDP0000939377 N 0.817
Bo2g097550 Brassica oleracea Bo2g097550 N 0.803
Bra008513 Brassica rapa Bra008513 N 0.803
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.803
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.803
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.803
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.803
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.803
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.803
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.803
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.789
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.789
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.789
Ca_22625 Cicer arietinum Ca_22625 N 0.789
Pm019567 Prunus mume Pm019567 N 0.789
30148.m001468 Ricinus communis 30148.m001468 N 0.789
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.789
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.789
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.789
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.789
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.789
PK03826.1 Cannabis sativa PK03826.1 N 0.789
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.775
TCM_025640 Theobroma cacao TCM_025640 N 0.775
SIGA Vitis vinifera VIT_16s0039g00660 N 0.775
Ca_22622 Cicer arietinum Ca_22622 N 0.775
Cla006897 Citrullus lanatus Cla006897 N 0.775
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.775
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.775
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.775
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.775
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.775
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.761
mgf004750m Mimulus guttatus mgf004750m N 0.761
mgf016433m Mimulus guttatus mgf016433m N 0.761
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.761
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.761
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.761
GRMZM2G360541 Zea mays GRMZM2G360541 N 0.757
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.746
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.746
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.746
mgf015154m Mimulus guttatus mgf015154m N 0.708