CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

YQE_07842 *(Dendroctonus ponderosae)* SMAD
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03165 (MH1)	IPR003619	YQE_07842	T325243_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Mad M06446_2.00	Drosophila melanogaster	GYGHCGBCVS	SBGVCGDCRC	B1H Zhu et al.(2011) Mad_FlyReg_FBgn0011648	1.000	1.000
Mad M08427_2.00	Drosophila melanogaster	SNGRCGMSRVSRBNS	SNVYSBYSKCGYCNS	ChIP-chip Mathelier et al.(2014) MA0535.1	1.000	1.000
Mad M09692_2.00	Drosophila melanogaster	KCBGSHGKCGCSNC	GNSGCGMCDSCVGM	Misc Kulakovskiy et al.(2009) Mad	1.000	1.000
Mad M11293_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$MAD_Q6	1.000	1.000
SMAD9 M11274_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD8_01	0.917	0.917
Smad9 M11290_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD8_02	0.917	0.917
Smad9 M11289_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD8_03	0.917	0.917
SMAD5 M05743_2.00	Homo sapiens	YGTCTAGACW	WGTCTAGACR	SELEX Yin et al.(2017) SMAD5_eDBD_HT-SELEX	0.861	0.861
SMAD1 M11286_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD1_01	0.861	0.861
SMAD1 M11287_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD1_Q6	0.861	0.861
Smad5 M11288_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD5_01	0.861	0.861
SMAD5 M11271_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD5_02	0.861	0.861
Smad5 M11292_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD5_03	0.861	0.861
SMAD5 M11272_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD5_Q5_01	0.861	0.861
SMAD5 M11273_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD5_Q5	0.861	0.861
SMAD5 M05744_2.00	Homo sapiens	CGTCTAGACR	YGTCTAGACG	SELEX Yin et al.(2017) SMAD5_eDBD_Methyl-HT-SELEX	0.861	0.861
For this family, TFs with SR scores > 0.700* will likely have a similar motif*