CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
EuGene.1300010403
(
Micromonas sp RCC299
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
EuGene.1300010403
T334485_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
63753
Sox
722
764
PRANPYAEFCREIRHKILAVDPTMPHTRVNRRLGELWRKKKAG
Links
Other
Sox
family TFs
Other
Micromonas sp RCC299
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0008s09740
Populus trichocarpa
POPTR_0008s09740
I
0.440
SapurV1A.0176s0460
Salix purpurea
SapurV1A.0176s0460
I
0.440
NEMVEDRAFT_v1g208858
Nematostella vectensis
NEMVEDRAFT_v1g208858
N
0.434