fgenesh1_pm.2_#_13 (Coccomyxa subellipsoidea C169)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pm.2_#_13 T334506_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
35003 Sox 174 219

Links

Other Sox family TFs
Other Coccomyxa subellipsoidea C169 TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgeneshCV_pg.C_scaffold_2000022 Chlorella vulgaris fgeneshCV_pg.C_scaffold_2000022 N 0.741
AMAM021723 Anopheles maculatus AMAM021723 N 0.592
GUITHDRAFT_162866 Guillardia theta GUITHDRAFT_162866 N 0.584
AAEL008417 Aedes aegypti AAEL008417 N 0.581
ADAC009894 Anopheles darlingi ADAC009894 N 0.547
AGAP004110 Anopheles gambiae AGAP004110 N 0.547
AALB007196 Anopheles albimanus AALB007196 N 0.547
AARA009694 Anopheles arabiensis AARA009694 N 0.547
AATE006267 Anopheles atroparvus AATE006267 N 0.547
ACHR002403 Anopheles christyi ACHR002403 N 0.547
ACOM033320 Anopheles coluzzii ACOM033320 N 0.547
ACUA003510 Anopheles culicifacies ACUA003510 N 0.547
ADIR002941 Anopheles dirus ADIR002941 N 0.547
AEPI008570 Anopheles epiroticus AEPI008570 N 0.547
AFAF018499 Anopheles farauti AFAF018499 N 0.547
AFUN011346 Anopheles funestus AFUN011346 N 0.547
AMEC005071 Anopheles melas AMEC005071 N 0.547
AMEM002948 Anopheles merus AMEM002948 N 0.547
AMIN003838 Anopheles minimus AMIN003838 N 0.547
AQUA009805 Anopheles quadriannulatus AQUA009805 N 0.547
ASIS023527 Anopheles sinensis ASIS023527 N 0.547
ASTEI04275 Anopheles stephensi ASTEI04275 N 0.547
TC004658 Tribolium castaneum TC004658 N 0.546
ISCW011313 Ixodes scapularis ISCW011313 N 0.545
CGI_10019404 Crassostrea gigas CGI_10019404 N 0.523
SPRG_06372 Saprolegnia parasitica SPRG_06372 N 0.519
maker-pir_contig_430-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_430-fgenesh-gene-0.3 N 0.519
maker-piw_contig_1911-snap-gene-0.6 Pythium iwayamai maker-piw_contig_1911-snap-gene-0.6 N 0.519
PYU1_G003004 Pythium ultimum PYU1_G003004 N 0.519
ccdc124 Oryzias latipes ENSORLG00000015728 N 0.515
BGIBMGA013514 Bombyx mori BGIBMGA013514 N 0.509
EFV51436 Trichinella spiralis EFV51436 N 0.509
HMEL009197 Heliconius melpomene HMEL009197 N 0.509
D917_07703 Trichinella nativa D917_07703 N 0.509
F443_19335 Phytophthora parasitica F443_19335 N 0.508
fgenesh_scip_prom.46568.2049 Phytophthora kernoviae fgenesh_scip_prom.46568.2049 N 0.508
Physo132366 Phytophthora sojae Physo132366 N 0.508
estExt_fgenesh1_kg.C_80399 Phytophthora capsici estExt_fgenesh1_kg.C_80399 N 0.508
fgenesh1_pg.C_scaffold_73784000001 Phytophthora capsici fgenesh1_pg.C_scaffold_73784000001 N 0.508
CpipJ_CPIJ005084 Culex pipiens CpipJ_CPIJ005084 N 0.507
CPIJ005084 Culex quinquefasciatus CPIJ005084 N 0.507
CLEC002888 Cimex lectularius CLEC002888 N 0.501
PHUM036320 Pediculus humanus PHUM036320 N 0.499
LCUP006380 Lucilia cuprina LCUP006380 N 0.498
ALUE_0001851001 Ascaris lumbricoides ALUE_0001851001 N 0.495
ASU_10445 Ascaris suum ASU_10445 N 0.495
PEQ_0000413701 Parascaris equorum PEQ_0000413701 N 0.495
RPRC009760 Rhodnius prolixus RPRC009760 N 0.494
NV13812 Nasonia vitripennis NV13812 I 0.488
fgenesh_scip_prom.28083.7036 Phytophthora lateralis fgenesh_scip_prom.28083.7036 N 0.483
Phyra74523 Phytophthora ramorum Phyra74523 N 0.483
estExt_fgenesh2_pg.C_1070085 Branchiostoma floridae estExt_fgenesh2_pg.C_1070085 N 0.480
estExt_fgenesh2_pm.C_3240002 Branchiostoma floridae estExt_fgenesh2_pm.C_3240002 N 0.480
TTRE_0000309701 Trichuris trichiura TTRE_0000309701 N 0.477
maker-pve_contig_105-snap-gene-0.29 Pythium vexans maker-pve_contig_105-snap-gene-0.29 N 0.475
TMUE_s0148001000 Trichuris muris TMUE_s0148001000 N 0.472
CapteG224864 Capitella teleta CapteG224864 I 0.470
LotgiG126557 Lottia gigantea LotgiG126557 N 0.469
TGME49_037260 Toxoplasma gondii TGME49_037260 N 0.469
cgd2_870 Cryptosporidium parvum cgd2_870 N 0.469
ETH_00032160 Eimeria tenella ETH_00032160 N 0.469
CBN09380 Caenorhabditis brenneri CBN09380 N 0.468
CJA05209 Caenorhabditis japonica CJA05209 N 0.468
CRE03905 Caenorhabditis remanei CRE03905 N 0.468
ACAC_0000409101 Angiostrongylus cantonensis ACAC_0000409101 N 0.467
ACOC_0001323101 Angiostrongylus costaricensis ACOC_0001323101 N 0.467
ANCCAN_29654 Ancylostoma caninum ANCCAN_29654 N 0.467
ANCCEY_08672 Ancylostoma ceylanicum ANCCEY_08672 N 0.467
DICVIV_03175 Dictyocaulus viviparus DICVIV_03175 N 0.467
KGM_20190 Danaus plexippus KGM_20190 I 0.464
MCINX012524 Melitaea cinxia MCINX012524 I 0.464
HCOI00594600 Haemonchus contortus HCOI00594600 N 0.464
HPBE_0001252601 Heligmosomoides bakeri HPBE_0001252601 N 0.464
HPLM_0000348901 Haemonchus placei HPLM_0000348901 N 0.464
NBR_0000605501 Nippostrongylus brasiliensis NBR_0000605501 N 0.464
TELCIR_11967 Teladorsagia circumcincta TELCIR_11967 N 0.464
NEMVEDRAFT_v1g201358 Nematostella vectensis NEMVEDRAFT_v1g201358 I 0.463
ALNC14_126360 Albugo laibachii ALNC14_126360 N 0.462
Y73E7A.1 Caenorhabditis elegans WBGene00022268 N 0.462
HelroG66455 Helobdella robusta HelroG66455 N 0.457
Ocbimv22013575m.g Octopus bimaculoides Ocbimv22013575m.g I 0.456
NECAME_12352 Necator americanus NECAME_12352 N 0.456
OESDEN_05486 Oesophagostomum dentatum OESDEN_05486 N 0.456
tetur18g00680 Tetranychus urticae tetur18g00680 I 0.453
HHAL005242-PA Halyomorpha halys HHAL005242-PA I 0.453
MDOA001488 Musca domestica MDOA001488 I 0.453
GB50764 Apis mellifera GB50764 I 0.448
SPU_001776 Strongylocentrotus purpuratus SPU_001776 N 0.442
ACEP12759 Atta cephalotes ACEP12759 I 0.441
SINV12391 Solenopsis invicta SINV12391 I 0.441
Hsal_04778--XP_394373.1_APIME Harpegnathos saltator Hsal_04778--XP_394373.1_APIME I 0.441
GPUH_0000676401 Gongylonema pulchrum GPUH_0000676401 N 0.437
TCLT_0001081001 Thelazia callipaeda TCLT_0001081001 N 0.437
DAPPUDRAFT_303074 Daphnia pulex DAPPUDRAFT_303074 N 0.431
NCLIV_051130 Neospora caninum NCLIV_051130 N 0.431
Minc12734 Meloidogyne incognita Minc12734 N 0.430
maker-nMf.1.1.scaf18285-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf18285-snap-gene-0.4 N 0.430
MhA1_Contig1250.frz3.gene10 Meloidogyne hapla MhA1_Contig1250.frz3.gene10 N 0.430
Chro.20098 Cryptosporidium hominis Chro.20098 N 0.425
GH18160 Drosophila grimshawi FBgn0125628 I 0.424
GK13574 Drosophila willistoni FBgn0215582 I 0.424
GE25578 Drosophila yakuba FBgn0242642 I 0.424
Cflo_06133--XP_394373.1_APIME Camponotus floridanus Cflo_06133--XP_394373.1_APIME I 0.419