CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LDEC018997
(
Leptinotarsa decemlineata
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
LDEC018997
T334904_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Cic
M00195_2.00
Mus musculus
NNTGCTGABN
NVTCAGCANN
PBM
Badis et al.(2009)
Cic_3454
0.651
0.846
cic
M06452_2.00
Drosophila melanogaster
YYCATTSA
TSAATGRR
B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386
0.610
0.785
gei-3
M00711_2.00
Caenorhabditis elegans
NWNWMWDN
NHWKWNWN
PBM
Narasimhan et al.(2015)
pTH10038
0.602
0.754
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LDEC018997-PA
Sox
1
65
MNAFMIFSKRHRGLVHQRHPNQDNRTVSKILGEWWYALGAAEKKKYHELASEVKDAHFRAHPEWK
Links
Other
Sox
family TFs
Other
Leptinotarsa decemlineata
TFs
198 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GPUH_0001970101
Gongylonema pulchrum
GPUH_0001970101
I
0.692
YQE_03282
Dendroctonus ponderosae
YQE_03282
I
0.665
NV10910
Nasonia vitripennis
NV10910
I
0.664
ENSAMXG00000014362
Astyanax mexicanus
ENSAMXG00000014362
I
0.660
cica
Danio rerio
ENSDARG00000071150
I
0.660
ACEP18843
Atta cephalotes
ACEP18843
I
0.658
GB43462
Apis mellifera
GB43462
I
0.658
TC004697
Tribolium castaneum
TC004697
I
0.658
AAEL004381
Aedes aegypti
AAEL004381
I
0.655
ENSONIG00000004979
Oreochromis niloticus
ENSONIG00000004979
I
0.653
ACYPI004663
Acyrthosiphon pisum
ACYPI004663
I
0.652
RPRC001090
Rhodnius prolixus
RPRC001090
I
0.652
Cflo_01544--XP_624175.2_APIME
Camponotus floridanus
Cflo_01544--XP_624175.2_APIME
I
0.652
CLEC003268
Cimex lectularius
CLEC003268
I
0.652
HHAL000065-PA
Halyomorpha halys
HHAL000065-PA
I
0.652
CapteG39126
Capitella teleta
CapteG39126
I
0.651
CGI_10015746
Crassostrea gigas
CGI_10015746
I
0.651
ENSAMXG00000018358
Astyanax mexicanus
ENSAMXG00000018358
I
0.651
ENSBTAG00000019785
Bos taurus
ENSBTAG00000019785
I
0.651
CIC
Canis familiaris
ENSCAFG00000004858
I
0.651
CIC
Callithrix jacchus
ENSCJAG00000012847
I
0.651
ENSCPOG00000004391
Cavia porcellus
ENSCPOG00000004391
I
0.651
CIC
Dasypus novemcinctus
ENSDNOG00000047657
I
0.651
Cic
Dipodomys ordii
ENSDORG00000008822
I
0.651
CIC
Equus caballus
ENSECAG00000011342
I
0.651
CIC
Echinops telfairi
ENSETEG00000017271
I
0.651
ENSFCAG00000012737
Felis catus
ENSFCAG00000012737
I
0.651
CIC
Homo sapiens
ENSG00000079432
I
0.651
cicb
Gasterosteus aculeatus
ENSGACG00000009452
I
0.651
CIC
Gorilla gorilla
ENSGGOG00000000192
I
0.651
ENSGMOG00000005167
Gadus morhua
ENSGMOG00000005167
I
0.651
ENSLACG00000002764
Latimeria chalumnae
ENSLACG00000002764
I
0.651
ENSMEUG00000016625
Macropus eugenii
ENSMEUG00000016625
I
0.651
ENSMICG00000015176
Microcebus murinus
ENSMICG00000015176
I
0.651
ENSMLUG00000016650
Myotis lucifugus
ENSMLUG00000016650
I
0.651
ENSMMUG00000012174
Macaca mulatta
ENSMMUG00000012174
I
0.651
ENSMPUG00000007557
Mustela putorius furo
ENSMPUG00000007557
I
0.651
Cic
Mus musculus
ENSMUSG00000005442
D
0.651
ENSNLEG00000010614
Nomascus leucogenys
ENSNLEG00000010614
I
0.651
ENSOARG00000007985
Ovis aries
ENSOARG00000007985
I
0.651
ENSOCUG00000006458
Oryctolagus cuniculus
ENSOCUG00000006458
I
0.651
CIC
Otolemur garnettii
ENSOGAG00000003964
I
0.651
ENSONIG00000013108
Oreochromis niloticus
ENSONIG00000013108
I
0.651
cicb
Oryzias latipes
ENSORLG00000013259
I
0.651
ENSPANG00000009039
Papio anubis
ENSPANG00000009039
I
0.651
ENSPFOG00000000116
Poecilia formosa
ENSPFOG00000000116
I
0.651
ENSPFOG00000016231
Poecilia formosa
ENSPFOG00000016231
I
0.651
ENSPPYG00000010041
Pongo abelii
ENSPPYG00000010041
I
0.651
CIC
Pan troglodytes
ENSPTRG00000011051
I
0.651
CIC
Pteropus vampyrus
ENSPVAG00000016806
I
0.651
Cic
Rattus norvegicus
ENSRNOG00000056118
I
0.651
CIC
Sus scrofa
ENSSSCG00000003030
I
0.651
ENSSTOG00000000852
Ictidomys tridecemlineatus
ENSSTOG00000000852
I
0.651
CIC
Tupaia belangeri
ENSTBEG00000009044
I
0.651
CIC
Tetraodon nigroviridis
ENSTNIG00000003521
I
0.651
CIC
Takifugu rubripes
ENSTRUG00000007193
I
0.651
CIC
Tursiops truncatus
ENSTTRG00000013873
I
0.651
PHUM079880
Pediculus humanus
PHUM079880
I
0.651
Alligator_sinensis_CCG005631.1
Alligator sinensis
Alligator_sinensis_CCG005631.1
I
0.651
Cmyd_10001800
Chelonia mydas
Cmyd_10001800
I
0.651
ENSP00000160740-D1
Bos grunniens
ENSP00000160740-D1
I
0.651
ENSP00000160740
Macaca fascicularis
ENSP00000160740
I
0.651
Myotis_brandtii_Cic_10007129
Myotis brandtii
Myotis_brandtii_Cic_10007129
I
0.651
Ogr10275
Ophisaurus gracilis
Ogr10275
I
0.651
Pvit_02876
Pogona vitticeps
Pvit_02876
I
0.651
gw.448.64.1
Branchiostoma floridae
gw.448.64.1
I
0.651
gw.46.292.1
Branchiostoma floridae
gw.46.292.1
I
0.651
Sakowv30042695m.g
Saccoglossus kowalevskii
Sakowv30042695m.g
I
0.651
cic
Xenopus tropicalis
XB-GENE-6467430
I
0.651
Hsal_08911--XP_624175.2_APIME
Harpegnathos saltator
Hsal_08911--XP_624175.2_APIME
I
0.649
CpipJ_CPIJ012202
Culex pipiens
CpipJ_CPIJ012202
I
0.647
ADAC008993
Anopheles darlingi
ADAC008993
I
0.647
AGAP013411
Anopheles gambiae
AGAP013411
I
0.647
CPIJ012202
Culex quinquefasciatus
CPIJ012202
I
0.647
KGM_16941
Danaus plexippus
KGM_16941
I
0.647
MCINX015089
Melitaea cinxia
MCINX015089
I
0.647
AALB003439
Anopheles albimanus
AALB003439
I
0.647
AARA001217
Anopheles arabiensis
AARA001217
I
0.647
ACHR006446
Anopheles christyi
ACHR006446
I
0.647
ACUA015009
Anopheles culicifacies
ACUA015009
I
0.647
ADIR003322
Anopheles dirus
ADIR003322
I
0.647
AEPI005675
Anopheles epiroticus
AEPI005675
I
0.647
AFAF009600
Anopheles farauti
AFAF009600
I
0.647
AFUN006011
Anopheles funestus
AFUN006011
I
0.647
AMAM017484
Anopheles maculatus
AMAM017484
I
0.647
AMEC010127
Anopheles melas
AMEC010127
I
0.647
AMEM005678
Anopheles merus
AMEM005678
I
0.647
AMIN003810
Anopheles minimus
AMIN003810
I
0.647
AQUA008168
Anopheles quadriannulatus
AQUA008168
I
0.647
ASTEI00261
Anopheles stephensi
ASTEI00261
I
0.647
LLOJ007756
Lutzomyia longipalpis
LLOJ007756
I
0.647
cica
Oryzias latipes
ENSORLG00000007091
I
0.645
CIC
Procavia capensis
ENSPCAG00000017001
I
0.645
SMAR009315
Strigamia maritima
SMAR009315
I
0.645
SPU_025292
Strongylocentrotus purpuratus
SPU_025292
I
0.645
D917_02434
Trichinella nativa
D917_02434
I
0.645
D918_06270
Trichuris suis
D918_06270
I
0.645
TMUE_s0223001200
Trichuris muris
TMUE_s0223001200
I
0.645
TTRE_0000098801
Trichuris trichiura
TTRE_0000098801
I
0.645
L798_08623
Zootermopsis nevadensis
L798_08623
I
0.642
BGIBMGA010263
Bombyx mori
BGIBMGA010263
I
0.640
Ocbimv22037932m.g
Octopus bimaculoides
Ocbimv22037932m.g
I
0.640
tetur21g00740
Tetranychus urticae
tetur21g00740
I
0.636
BGLB001462
Biomphalaria glabrata
BGLB001462
I
0.635
CRE24068
Caenorhabditis remanei
CRE24068
I
0.634
L892_g3879
Steinernema scapterisci
L892_g3879
I
0.630
SBAD_0000026401
Soboliphyme baturini
SBAD_0000026401
I
0.629
nAv.1.0.1.g00032
Acanthocheilonema viteae
nAv.1.0.1.g00032
I
0.627
WUBG_04884
Wuchereria bancrofti
WUBG_04884
I
0.623
Bm5934
Brugia malayi
Bm5934
I
0.623
LOAG_17202
Loa loa
LOAG_17202
I
0.623
WBGene00241539
Onchocerca volvulus
WBGene00241539
I
0.623
ASIM_0000334601
Anisakis simplex
ASIM_0000334601
I
0.623
ASU_10300
Ascaris suum
ASU_10300
I
0.623
nDi.2.2.2.g01012
Dirofilaria immitis
nDi.2.2.2.g01012
I
0.623
nLs.2.1.2.g07996
Litomosoides sigmodontis
nLs.2.1.2.g07996
I
0.623
nOo.2.0.1.g00287
Onchocerca ochengi
nOo.2.0.1.g00287
I
0.623
OFLC_0001331401
Onchocerca flexuosa
OFLC_0001331401
I
0.623
TCLT_0000608401
Thelazia callipaeda
TCLT_0000608401
I
0.623
ENSCING00000007655
Ciona intestinalis
ENSCING00000007655
I
0.622
L596_g5739
Steinernema carpocapsae
L596_g5739
I
0.621
L889_g11174
Steinernema feltiae
L889_g11174
I
0.621
L893_g26751
Steinernema glaseri
L893_g26751
I
0.621
L898_g8837
Steinernema monticolum
L898_g8837
I
0.614
SVUK_0000932601
Strongylus vulgaris
SVUK_0000932601
I
0.613
GF17645
Drosophila ananassae
FBgn0094663
I
0.610
GG23823
Drosophila erecta
FBgn0115962
I
0.610
GM23104
Drosophila sechellia
FBgn0177972
I
0.610
GD19345
Drosophila simulans
FBgn0190847
I
0.610
GK10919
Drosophila willistoni
FBgn0212930
I
0.610
GE25659
Drosophila yakuba
FBgn0242721
I
0.610
cic
Drosophila melanogaster
FBgn0262582
D
0.610
LCUP009387
Lucilia cuprina
LCUP009387
I
0.610
MDOA004531
Musca domestica
MDOA004531
I
0.610
ANCCAN_00149
Ancylostoma caninum
ANCCAN_00149
I
0.608
ANCCEY_04123
Ancylostoma ceylanicum
ANCCEY_04123
I
0.608
ANCDUO_05529
Ancylostoma duodenale
ANCDUO_05529
I
0.608
Hba_18941
Heterorhabditis bacteriophora
Hba_18941
I
0.608
OESDEN_00065
Oesophagostomum dentatum
OESDEN_00065
I
0.608
SMU15002098
Schmidtea mediterranea
SMU15002098
I
0.604
GJ23448
Drosophila virilis
FBgn0210547
I
0.603
CBN17413
Caenorhabditis brenneri
CBN17413
I
0.602
CJA07419
Caenorhabditis japonica
CJA07419
I
0.602
gei-3
Caenorhabditis elegans
WBGene00001560
D
0.602
EVEC_0000011601
Enterobius vermicularis
EVEC_0000011601
I
0.602
SMUV_0001072601
Syphacia muris
SMUV_0001072601
I
0.602
GH23608
Drosophila grimshawi
FBgn0131065
I
0.593
GL12097
Drosophila persimilis
FBgn0149705
I
0.583
GA30228
Drosophila pseudoobscura
FBgn0263363
I
0.583
GI22721
Drosophila mojavensis
FBgn0145448
I
0.576
scaffold4-EXSNAP2012.129
Pristionchus exspectatus
scaffold4-EXSNAP2012.129
I
0.574
RSKR_0000077800
Rhabditophanes kr3021
RSKR_0000077800
I
0.573
Smp_142600
Schistosoma mansoni
Smp_142600
I
0.571
Sjc_0093980
Schistosoma japonicum
Sjc_0093980
I
0.571
B_00914
Schistosoma haematobium
B_00914
I
0.571
SCUD_0001673101
Schistosoma curassoni
SCUD_0001673101
I
0.571
PTRK_0000169700
Parastrongyloides trichosuri
PTRK_0000169700
I
0.564
SPAL_0001296500
Strongyloides papillosus
SPAL_0001296500
I
0.564
SSTP_0000494800
Strongyloides stercoralis
SSTP_0000494800
I
0.564
SVE_0052600
Strongyloides venezuelensis
SVE_0052600
I
0.564
csin104163
Clonorchis sinensis
csin104163
I
0.541
T265_01499
Opisthorchis viverrini
T265_01499
I
0.541
XP_002160522.1
Hydra magnipapillata
XP_002160522.1
I
0.534
CBG00068
Caenorhabditis briggsae
CBG00068
I
0.529
ECPE_0001539401
Echinostoma caproni
ECPE_0001539401
I
0.522
HMEL006651
Heliconius melpomene
HMEL006651
I
0.520
BTMF_0001637101
Brugia timori
BTMF_0001637101
I
0.515
fgenesh1_pg.scaffold_35000054
Monosiga brevicollis
fgenesh1_pg.scaffold_35000054
I
0.507
SNAPOd2T00000335001
Oikopleura dioica
SNAPOd2T00000335001
I
0.504
Ocbimv22001036m.g
Octopus bimaculoides
Ocbimv22001036m.g
I
0.497
LotgiG100217
Lottia gigantea
LotgiG100217
I
0.490
D915_09544
Fasciola hepatica
D915_09544
I
0.487
HMEL002398
Heliconius melpomene
HMEL002398
I
0.484
DAPPUDRAFT_37735
Daphnia pulex
DAPPUDRAFT_37735
I
0.483
ENSLOCG00000004648
Lepisosteus oculatus
ENSLOCG00000004648
I
0.483
EFV48447
Trichinella spiralis
EFV48447
I
0.477
NEMVEDRAFT_v1g122926
Nematostella vectensis
NEMVEDRAFT_v1g122926
I
0.473
ACEP13490
Atta cephalotes
ACEP13490
I
0.460
GALMADRAFT_340474
Galerina marginata
GALMADRAFT_340474
I
0.449
NECAME_00080
Necator americanus
NECAME_00080
I
0.440
BGIBMGA011668
Bombyx mori
BGIBMGA011668
I
0.437
KGM_16790
Danaus plexippus
KGM_16790
I
0.436
HelroG148142
Helobdella robusta
HelroG148142
I
0.434
BGLB009093
Biomphalaria glabrata
BGLB009093
I
0.434
TELCIR_02356
Teladorsagia circumcincta
TELCIR_02356
I
0.432
DEHA2E09460g
Debaryomyces hansenii
DEHA2E09460g
I
0.428
GNLVRS01_PISO0K11912g
Millerozyma farinosa
GNLVRS01_PISO0K11912g
I
0.428
GNLVRS01_PISO0L11913g
Millerozyma farinosa
GNLVRS01_PISO0L11913g
I
0.428
PTSG_01623
Salpingoeca rosetta
PTSG_01623
I
0.427
CapteG223458
Capitella teleta
CapteG223458
I
0.420
CapteG39110
Capitella teleta
CapteG39110
I
0.420
CGI_10018417
Crassostrea gigas
CGI_10018417
I
0.420
LotgiG89909
Lottia gigantea
LotgiG89909
I
0.420
ACEP13631
Atta cephalotes
ACEP13631
I
0.419
L798_05271
Zootermopsis nevadensis
L798_05271
I
0.419
ADIR000881
Anopheles dirus
ADIR000881
I
0.419
ASTEI07817
Anopheles stephensi
ASTEI07817
I
0.419
XP_002160058.1
Hydra magnipapillata
XP_002160058.1
I
0.415