CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PredSwiss_ASS2010_405.1
(
Pneumocystis carinii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
PredSwiss_ASS2010_405.1
T334943_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PredSwiss_ASS2010_405.1
Sox
148
211
YCKNIADRNKQKETGNPQAKATKNEIRATLGKTWRSLTDDEKKPFFDIVAENRLNFSNLIEEYN
Links
Other
Sox
family TFs
Other
Pneumocystis carinii
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PNEG_00396
Pneumocystis murina
PNEG_00396
N
0.741
PredSwiss_CON4.1
Pneumocystis carinii
PredSwiss_CON4.1
N
0.620
SOCG_03518
Schizosaccharomyces octosporus
SOCG_03518
N
0.436
lsd1
Schizosaccharomyces pombe
SPBC146.09c
N
0.436
SPOG_04221
Schizosaccharomyces cryophilus
SPOG_04221
N
0.436