CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15030340
(
Schmidtea mediterranea
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
SMU15030340
T335031_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15030340
Sox
6
76
PPGSKSAYICFLQSFGKKYKIKYPNIKPSFAEISKLAAEKWKRKSETDKVKFRELAAIDKKRHDEEMANYT
SMU15030340
Sox
101
167
PKNPVSAFFFFCSKFRTSVKESKPNFKIVDVSRELGKMWKECTDKNEYENLAKLAKTEYHNQMKIYL
Links
Other
Sox
family TFs
Other
Schmidtea mediterranea
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SMU15027649
Schmidtea mediterranea
SMU15027649
N
0.488
HNAJ_0001249801
Hymenolepis nana
HNAJ_0001249801
N
0.422
HmN_000466000
Hymenolepis microstoma
HmN_000466000
N
0.422
HDID_0000237901
Hymenolepis diminuta
HDID_0000237901
N
0.422
SMU15029911
Schmidtea mediterranea
SMU15029911
N
0.419