CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf10171-augustus-gene-0.8
(
Meloidogyne floridensis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
maker-nMf.1.1.scaf10171-augustus-gene-0.8
T336596_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf10171-augustus-gene-0.8-mRNA-1
Sox
355
420
PRQPWSDYFIWLQENMQKFIDKYGKIDYLRHAINEWKNMPVKEKLIWTKKSDKDKRRYQREIVEYY
Links
Other
Sox
family TFs
Other
Meloidogyne floridensis
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MhA1_Contig1689.frz3.gene12
Meloidogyne hapla
MhA1_Contig1689.frz3.gene12
N
0.722