CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nLs.2.1.2.g01322
(
Litomosoides sigmodontis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
nLs.2.1.2.g01322
T336704_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nLs.2.1.2.t01322-RA
Sox
27
97
PKRPHTAYVHFVNARRKELTNSDSHETLHQRSFLADVAKQWKALSDDQKKFYFDKSAKEHSDYQKAMEEYR
Links
Other
Sox
family TFs
Other
Litomosoides sigmodontis
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nDi.2.2.2.g08184
Dirofilaria immitis
nDi.2.2.2.g08184
N
0.624
LOAG_06904
Loa loa
LOAG_06904
N
0.603
Bm9858
Brugia malayi
Bm9858
N
0.575
BTMF_0001276701
Brugia timori
BTMF_0001276701
N
0.575
TCLT_0000054001
Thelazia callipaeda
TCLT_0000054001
N
0.504
WBGene00246010
Onchocerca volvulus
WBGene00246010
N
0.499
nOo.2.0.1.g04260
Onchocerca ochengi
nOo.2.0.1.g04260
N
0.499
nAv.1.0.1.g02807
Acanthocheilonema viteae
nAv.1.0.1.g02807
N
0.429