CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
scaffold144-EXSNAP2012.23
(
Pristionchus exspectatus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
scaffold144-EXSNAP2012.23
T336899_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold144-EXSNAP2012.23
Sox
29
91
KLGPYALFLKDNAAKSSVKINKSSIAGFGKETAAKWKALSEPEKKTYSKRAQEINDKAMADFL
scaffold144-EXSNAP2012.23
Sox
131
199
PKMPTNAYLLFVKEKMNQGTKVSSKEEGASRVKALAEEWRGMTDSAKAKYVKVADAQSATYKIELEKWK
Links
Other
Sox
family TFs
Other
Pristionchus exspectatus
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ppa-fkb-1
Pristionchus pacificus
PPA21842
N
0.690