CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf03029-processed-gene-0.1
(
Meloidogyne floridensis
)
TBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00352 (TBP)
IPR000814
augustus_masked-nMf.1.1.scaf03029-processed-gene-0.1
T343420_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf03029-processed-gene-0.1-mRNA-1
TBP
117
207
IMKIENCTAVFKLLPKKLRFSHENFIQLARFGINTEYNPKRFHSIIMRIRLKENRTTAALIFESSKVVLTGVPNPELARKLAWKVTKRILS
augustus_masked-nMf.1.1.scaf03029-processed-gene-0.1-mRNA-1
TBP
223
309
NLRVTNIVGVYCHTQRLAIEKIFKQHRNNNNFRRVFYDPTIFPALRFKIKEASCLCYISGRVILTGIKTQEQMKEIFENILLPLFVK
Links
Other
TBP
family TFs
Other
Meloidogyne floridensis
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
augustus_masked-nMf.1.1.scaf18986-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf18986-processed-gene-0.0
N
0.904