Cagra.4440s0003 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.4440s0003 T344746_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP16
M00893_2.00 		Arabidopsis thaliana
NNGGNCCRB
VYGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP16 		0.878 0.505
TCP16
M07287_2.00 		Arabidopsis thaliana
RTKGGGYCCAC
GTGGRCCCMAY		 Dap-seq
OMalley et al.(2016)
TCP16_col_a 		0.878 0.505
TCP16
M07288_2.00 		Arabidopsis thaliana
NRGGHCCACHN
NDGTGGDCCYN		 Dap-seq
OMalley et al.(2016)
TCP16_colamp_a 		0.878 0.505
TCP16
M02721_2.00 		Arabidopsis thaliana
BBGGGHCCAC
GTGGDCCCVV		 SELEX
Mathelier et al.(2014)
MA0587.1 		0.878 0.505
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4440s0003.1.p TCP 15 168

Links

Other TCP family TFs
Other Capsella grandiflora TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10018433m.g Capsella rubella Carubv10018433m.g I 0.977
TCP16 Arabidopsis lyrata scaffold_501366.1 I 0.942
Bostr.21132s0005 Boechera stricta Bostr.21132s0005 I 0.919
TCP16 Arabidopsis thaliana AT3G45150 D 0.878
Bostr.21132s0002 Boechera stricta Bostr.21132s0002 N 0.878
Thhalv10002961m.g Eutrema salsugineum Thhalv10002961m.g I 0.844