MDP0000189749 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000189749 T344919_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.868 0.331
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.867 0.338
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.867 0.338
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.867 0.338
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.863 0.324
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.854 0.346
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.842 0.331
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000189749 TCP 33 184

Links

Other TCP family TFs
Other Malus domestica TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000182310 Malus domestica MDP0000182310 I 0.945
MDP0000259723 Malus domestica MDP0000259723 I 0.945
Pm010118 Prunus mume Pm010118 I 0.937
PRUPE_ppb024383mg Prunus persica PRUPE_ppb024383mg I 0.936
MTR_8g463380 Medicago truncatula MTR_8g463380 I 0.897
POPTR_0011s09890 Populus trichocarpa POPTR_0011s09890 I 0.893
Pm029788 Prunus mume Pm029788 I 0.893
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.891
chr3.CM0160.1110.nc Lotus japonicus chr3.CM0160.1110.nc I 0.891
MTR_2g090960 Medicago truncatula MTR_2g090960 I 0.890
TCM_003652 Theobroma cacao TCM_003652 I 0.889
Cla013734 Citrullus lanatus Cla013734 I 0.889
Solyc02g077250.2 Solanum lycopersicum Solyc02g077250.2 I 0.888
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.888
Ca_02473 Cicer arietinum Ca_02473 I 0.888
Aquca_005_00099 Aquilegia coerulea Aquca_005_00099 I 0.887
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.887
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.887
MDP0000916623 Malus domestica MDP0000916623 I 0.887
PGSC0003DMG400026626 Solanum tuberosum PGSC0003DMG400026626 I 0.886
Solyc10g008780.1 Solanum lycopersicum Solyc10g008780.1 I 0.886
Ca_12866 Cicer arietinum Ca_12866 I 0.886
MDP0000442611 Malus domestica MDP0000442611 I 0.886
PK12847.1 Cannabis sativa PK12847.1 I 0.886
PGSC0003DMG400012396 Solanum tuberosum PGSC0003DMG400012396 I 0.884
Solyc07g062680.1 Solanum lycopersicum Solyc07g062680.1 I 0.884
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.884
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.884
POPTR_0019s12110 Populus trichocarpa POPTR_0019s12110 I 0.883
29646.m001101 Ricinus communis 29646.m001101 I 0.883
30192.m000545 Ricinus communis 30192.m000545 I 0.883
PRUPE_ppa007094mg Prunus persica PRUPE_ppa007094mg I 0.882
TCP10 Vitis vinifera VIT_12s0028g02520 I 0.882
GLYMA13G36840 Glycine max GLYMA13G36840 I 0.881
Cla002460 Citrullus lanatus Cla002460 I 0.881
Cucsa.273460 Cucumis sativus Cucsa.273460 I 0.881
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.881
SapurV1A.0083s0520 Salix purpurea SapurV1A.0083s0520 I 0.881
POPTR_0013s12370 Populus trichocarpa POPTR_0013s12370 I 0.880
TCM_031706 Theobroma cacao TCM_031706 I 0.880
Ca_16227 Cicer arietinum Ca_16227 I 0.880
cassava35945.valid.m1 Manihot esculenta cassava35945.valid.m1 I 0.880
SapurV1A.1073s0050 Salix purpurea SapurV1A.1073s0050 I 0.880
SapurV1A.2882s0020 Salix purpurea SapurV1A.2882s0020 I 0.880
SapurV1A.5793s0010 Salix purpurea SapurV1A.5793s0010 I 0.880
Solyc05g032780.1 Solanum lycopersicum Solyc05g032780.1 I 0.879
Eucgr.F01204 Eucalyptus grandis Eucgr.F01204 I 0.879
Cucsa.384890 Cucumis sativus Cucsa.384890 I 0.878
mgf021685m Mimulus guttatus mgf021685m I 0.878
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.877
Ca_11295 Cicer arietinum Ca_11295 I 0.877
Cagra.2527s0006 Capsella grandiflora Cagra.2527s0006 I 0.877
Thhalv10016870m.g Eutrema salsugineum Thhalv10016870m.g I 0.877
Thhalv10020786m.g Eutrema salsugineum Thhalv10020786m.g I 0.877
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.876
Gorai.009G373000 Gossypium raimondii Gorai.009G373000 I 0.876
Bo3g066540 Brassica oleracea Bo3g066540 I 0.875
Bo5g127500 Brassica oleracea Bo5g127500 I 0.875
Bra027284 Brassica rapa Bra027284 I 0.875
PGSC0003DMG400022964 Solanum tuberosum PGSC0003DMG400022964 I 0.875
Ciclev10008390m.g Citrus clementina Ciclev10008390m.g I 0.875
orange1.1g014360m.g Citrus sinensis orange1.1g014360m.g I 0.875
AMTR_s00021p00158020 Amborella trichopoda AMTR_s00021p00158020 I 0.874
PGSC0003DMG400015377 Solanum tuberosum PGSC0003DMG400015377 I 0.874
XM_002300382.1 Populus trichocarpa POPTR_0001s38480 I 0.874
Solyc11g045640.1 Solanum lycopersicum Solyc11g045640.1 I 0.874
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.874
cassava35669.valid.m1 Manihot esculenta cassava35669.valid.m1 I 0.874
evm.TU.supercontig_209.13 Carica papaya evm.TU.supercontig_209.13 I 0.874
SapurV1A.0303s0040 Salix purpurea SapurV1A.0303s0040 I 0.874
TCP10 Arabidopsis thaliana AT2G31070 I 0.873
GLYMA12G33640 Glycine max GLYMA12G33640 I 0.873
TCP10 Arabidopsis lyrata scaffold_401627.1 I 0.873
Carubv10023502m.g Capsella rubella Carubv10023502m.g I 0.873
Gorai.002G064500 Gossypium raimondii Gorai.002G064500 I 0.873
Gorai.013G172800 Gossypium raimondii Gorai.013G172800 I 0.873
Solyc10g018710.1 Solanum lycopersicum Solyc10g018710.1 I 0.872
Solyc12g014140.1 Solanum lycopersicum Solyc12g014140.1 I 0.872
VIT_19s0014g01680 Vitis vinifera VIT_19s0014g01680 I 0.872
SapurV1A.0500s0140 Salix purpurea SapurV1A.0500s0140 I 0.872
cassava19177.valid.m1 Manihot esculenta cassava19177.valid.m1 I 0.871
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.870
Cagra.1472s0007 Capsella grandiflora Cagra.1472s0007 I 0.870
Carubv10009348m.g Capsella rubella Carubv10009348m.g I 0.870
Carubv10013851m.g Capsella rubella Carubv10013851m.g I 0.870
evm.TU.supercontig_131.71 Carica papaya evm.TU.supercontig_131.71 I 0.870
GLYMA06G43721 Glycine max GLYMA06G43721 I 0.869
GSMUA_Achr10G14340_001 Musa acuminata GSMUA_Achr10G14340_001 I 0.869
PGSC0003DMG400009406 Solanum tuberosum PGSC0003DMG400009406 I 0.869
PK04257.1 Cannabis sativa PK04257.1 I 0.869
TCP3 Arabidopsis lyrata fgenesh2_kg.1__4401__AT1G53230.1 I 0.868
GSMUA_Achr3G03540_001 Musa acuminata GSMUA_Achr3G03540_001 I 0.868
GSMUA_Achr3G31370_001 Musa acuminata GSMUA_Achr3G31370_001 I 0.868
TCP4 Arabidopsis lyrata scaffold_301743.1 D 0.868
TCP3 Arabidopsis thaliana AT1G53230 D 0.867
GLYMA06G34330 Glycine max GLYMA06G34330 I 0.867
Bostr.0124s0115 Boechera stricta Bostr.0124s0115 I 0.867
Cagra.0007s0045 Capsella grandiflora Cagra.0007s0045 I 0.867
Bostr.28625s0206 Boechera stricta Bostr.28625s0206 I 0.866
AMTR_s00007p00041830 Amborella trichopoda AMTR_s00007p00041830 I 0.865
Bra030952 Brassica rapa Bra030952 I 0.865
mgf002386m Mimulus guttatus mgf002386m I 0.865
MDP0000184743 Malus domestica MDP0000184743 I 0.865
Bra018280 Brassica rapa Bra018280 I 0.864
Thhalv10011534m.g Eutrema salsugineum Thhalv10011534m.g I 0.864
TCP4 Arabidopsis thaliana AT3G15030 D 0.863
Bra021586 Brassica rapa Bra021586 I 0.863
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.863
PRUPE_ppa004661mg Prunus persica PRUPE_ppa004661mg I 0.863
Pm011369 Prunus mume Pm011369 I 0.863
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.862
Solyc07g053410.2 Solanum lycopersicum Solyc07g053410.2 I 0.862
GLYMA12G20160 Glycine max GLYMA12G20160 I 0.861
MTR_2g078200 Medicago truncatula MTR_2g078200 I 0.861
Bo4g053680 Brassica oleracea Bo4g053680 I 0.860
Bra001579 Brassica rapa Bra001579 I 0.860
Cla023702 Citrullus lanatus Cla023702 I 0.860
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.860
AMTR_s00119p00135380 Amborella trichopoda AMTR_s00119p00135380 I 0.859
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.859
GSMUA_Achr4G22960_001 Musa acuminata GSMUA_Achr4G22960_001 I 0.858
GSMUA_Achr5G02530_001 Musa acuminata GSMUA_Achr5G02530_001 I 0.858
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.857
Si004564m.g Setaria italica Si004564m.g I 0.857
MDP0000243495 Malus domestica MDP0000243495 I 0.857
29646.m001100 Ricinus communis 29646.m001100 I 0.856
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.856
Bo1g129830 Brassica oleracea Bo1g129830 I 0.855
GSMUA_Achr5G06660_001 Musa acuminata GSMUA_Achr5G06660_001 I 0.855
gene27171-v1.0-hybrid Fragaria vesca gene27171-v1.0-hybrid I 0.855
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.854
PCF5 Oryza indica BGIOSGA002128 I 0.854
GSMUA_Achr2G12990_001 Musa acuminata GSMUA_Achr2G12990_001 I 0.854
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.854
OBART01G07230 Oryza barthii OBART01G07230 I 0.854
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.854
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.854
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.854
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.854
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.854
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.854
OS01G0213800 Oryza sativa OS01G0213800 D 0.854
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.853
Cla016530 Citrullus lanatus Cla016530 I 0.852
GSMUA_Achr6G14430_001 Musa acuminata GSMUA_Achr6G14430_001 I 0.850
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.850
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.850
LPERR07G02820 Leersia perrieri LPERR07G02820 I 0.849
GSMUA_Achr8G19990_001 Musa acuminata GSMUA_Achr8G19990_001 I 0.848
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.848
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.848
GRMZM2G020805 Zea mays GRMZM2G020805 I 0.847
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.846
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.846
GSMUA_Achr7G25320_001 Musa acuminata GSMUA_Achr7G25320_001 I 0.845
Pavir.Ba03864 Panicum virgatum Pavir.Ba03864 I 0.845
PK29658.1 Cannabis sativa PK29658.1 I 0.844
MDP0000927314 Malus domestica MDP0000927314 I 0.843
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.842
GRMZM2G115516 Zea mays GRMZM2G115516 I 0.842
OPUNC07G03260 Oryza punctata OPUNC07G03260 I 0.842
Pm010440 Prunus mume Pm010440 I 0.842
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.842
mgf017929m Mimulus guttatus mgf017929m I 0.841
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.840
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.840
Sb01g006020 Sorghum bicolor Sb01g006020 I 0.840
TCM_029442 Theobroma cacao TCM_029442 I 0.840
MDP0000287069 Malus domestica MDP0000287069 I 0.840
BRADI1G58450 Brachypodium distachyon BRADI1G58450 I 0.839
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.839
MLOC_63989 Hordeum vulgare MLOC_63989 I 0.839
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.839
Sb02g003070 Sorghum bicolor Sb02g003070 I 0.839
Si036075m.g Setaria italica Si036075m.g I 0.839
Traes_5BL_2DDBAA0C2 Triticum aestivum Traes_5BL_2DDBAA0C2 I 0.839
gene29800-v1.0-hybrid Fragaria vesca gene29800-v1.0-hybrid N 0.839
Pavir.J36433 Panicum virgatum Pavir.J36433 I 0.839
GRMZM2G089361 Zea mays GRMZM2G089361 I 0.838
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.838
gene30370-v1.0-hybrid Fragaria vesca gene30370-v1.0-hybrid I 0.838
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.838
Pavir.Ia00505 Panicum virgatum Pavir.Ia00505 I 0.838
PCF6 Oryza indica BGIOSGA013684 I 0.837
OGLUM03G36280 Oryza glumaepatula OGLUM03G36280 I 0.837
ONIVA03G37780 Oryza nivara ONIVA03G37780 I 0.837
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.837
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.837
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.836
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.835
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.835
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.834
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.833
Lus10023297.g Linum usitatissimum Lus10023297.g I 0.833
29693.m001968 Ricinus communis 29693.m001968 I 0.832
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.832
OMERI03G33790 Oryza meridionalis OMERI03G33790 I 0.831
ORUFI03G38070 Oryza rufipogon ORUFI03G38070 I 0.831
PCF6 Oryza sativa OS03G0785800 I 0.831
Ca_05033 Cicer arietinum Ca_05033 I 0.831
Pm024946 Prunus mume Pm024946 I 0.831
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.831
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.831
AMTR_s00029p00245970 Amborella trichopoda AMTR_s00029p00245970 I 0.830
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.830
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.830
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.830
Bra010789 Brassica rapa Bra010789 I 0.829
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.829
Ca_00482 Cicer arietinum Ca_00482 I 0.828
GLYMA05G27367 Glycine max GLYMA05G27367 I 0.827
mgf024988m Mimulus guttatus mgf024988m I 0.827
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.827
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.826
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.822
fgenesh1_pg.scaffold_332000019 Physcomitrella patens fgenesh1_pg.scaffold_332000019 I 0.822
Cagra.3678s0010 Capsella grandiflora Cagra.3678s0010 I 0.822
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.822