Pavir.Ib04470 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Ib04470 T356797_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY14
M00731_2.00 		Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN		 PBM
Chang et al.(2013)
pTH7570 		0.810 0.500
WRKY14
M07375_2.00 		Arabidopsis thaliana
NAAAGTCAACGNN
NNCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY14_col_a 		0.810 0.500
WRKY14
M07376_2.00 		Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY14_colamp_a 		0.810 0.500
WRKY65
M07372_2.00 		Arabidopsis thaliana
NWWAGTCAACG
CGTTGACTWWN		 Dap-seq
OMalley et al.(2016)
WRKY65_col_a 		0.810 0.464
WRKY65
M07373_2.00 		Arabidopsis thaliana
NAAAGTCAACGN
NCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY65_colamp_a 		0.810 0.464
WRKY27
M02566_2.00 		Arabidopsis thaliana
NNGTCHDNN
NNHDGACNN		 PBM
Weirauch et al.(2014)
pTH8188 		0.810 0.445
WRKY27
M07430_2.00 		Arabidopsis thaliana
MAAAGTCAACKNH
DNMGTTGACTTTK		 Dap-seq
OMalley et al.(2016)
WRKY27_col_a 		0.810 0.445
WRKY27
M07431_2.00 		Arabidopsis thaliana
HAAAGTCAACKNH
DNMGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY27_colamp_a 		0.810 0.445
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04470.1.p WRKY 179 237
Pavir.Ib04470.1.p WRKY 248 298

Links

Other WRKY family TFs
Other Panicum virgatum TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ia00085 Panicum virgatum Pavir.Ia00085 I 0.818
AMTR_s00032p00016380 Amborella trichopoda AMTR_s00032p00016380 I 0.813
WRKY35 Arabidopsis thaliana AT2G34830 I 0.813
BGIOSGA008866 Oryza indica BGIOSGA008866 I 0.813
BGIOSGA017037 Oryza indica BGIOSGA017037 I 0.813
Bo4g039260 Brassica oleracea Bo4g039260 I 0.813
Bo4g182940 Brassica oleracea Bo4g182940 I 0.813
Bra005388 Brassica rapa Bra005388 I 0.813
Bra021934 Brassica rapa Bra021934 I 0.813
BRADI3G52420 Brachypodium distachyon BRADI3G52420 I 0.813
F775_18241 Aegilops tauschii F775_18241 I 0.813
WRKY35 Arabidopsis lyrata fgenesh2_kg.4__1506__AT2G34830.1 I 0.813
GLYMA08G08340 Glycine max GLYMA08G08340 I 0.813
GLYMA09G03451 Glycine max GLYMA09G03451 I 0.813
GLYMA15G14371 Glycine max GLYMA15G14371 I 0.813
GRMZM2G024898 Zea mays GRMZM2G024898 I 0.813
GRMZM2G083717 Zea mays GRMZM2G083717 I 0.813
LPERR02G23560 Leersia perrieri LPERR02G23560 I 0.813
LPERR03G35420 Leersia perrieri LPERR03G35420 I 0.813
LPERR04G19510 Leersia perrieri LPERR04G19510 I 0.813
MLOC_58349 Hordeum vulgare MLOC_58349 I 0.813
MLOC_64446 Hordeum vulgare MLOC_64446 I 0.813
MTR_2g032030 Medicago truncatula MTR_2g032030 I 0.813
OB02G36150 Oryza brachyantha OB02G36150 I 0.813
OB03G48510 Oryza brachyantha OB03G48510 I 0.813
OB04G30700 Oryza brachyantha OB04G30700 I 0.813
OBART02G29000 Oryza barthii OBART02G29000 I 0.813
OBART03G41470 Oryza barthii OBART03G41470 I 0.813
OBART04G23800 Oryza barthii OBART04G23800 I 0.813
OGLUM02G29590 Oryza glumaepatula OGLUM02G29590 I 0.813
OGLUM03G41320 Oryza glumaepatula OGLUM03G41320 I 0.813
OGLUM04G23760 Oryza glumaepatula OGLUM04G23760 I 0.813
OLONG_003240 Oryza longistaminata OLONG_003240 I 0.813
OLONG_013338 Oryza longistaminata OLONG_013338 I 0.813
OMERI02G27980 Oryza meridionalis OMERI02G27980 I 0.813
OMERI04G19680 Oryza meridionalis OMERI04G19680 I 0.813
ONIVA02G31730 Oryza nivara ONIVA02G31730 I 0.813
ONIVA04G22850 Oryza nivara ONIVA04G22850 I 0.813
OPUNC02G26570 Oryza punctata OPUNC02G26570 I 0.813
OPUNC03G38520 Oryza punctata OPUNC03G38520 I 0.813
OPUNC04G21350 Oryza punctata OPUNC04G21350 I 0.813
ORGLA02G0248500 Oryza glaberrima ORGLA02G0248500 I 0.813
ORGLA03G0383600 Oryza glaberrima ORGLA03G0383600 I 0.813
ORGLA04G0203800 Oryza glaberrima ORGLA04G0203800 I 0.813
ORUFI02G30560 Oryza rufipogon ORUFI02G30560 I 0.813
ORUFI04G25540 Oryza rufipogon ORUFI04G25540 I 0.813
OS02G0698800 Oryza sativa OS02G0698800 I 0.813
OS04G0597300 Oryza sativa OS04G0597300 I 0.813
PGSC0003DMG400015104 Solanum tuberosum PGSC0003DMG400015104 I 0.813
POPTR_0001s46490 Populus trichocarpa POPTR_0001s46490 I 0.813
POPTR_0011s16050 Populus trichocarpa POPTR_0011s16050 I 0.813
PRUPE_ppa004535mg Prunus persica PRUPE_ppa004535mg I 0.813
Sb01g000696 Sorghum bicolor Sb01g000696 I 0.813
Sb06g027290 Sorghum bicolor Sb06g027290 I 0.813
Si011735m.g Setaria italica Si011735m.g I 0.813
Si038727m.g Setaria italica Si038727m.g I 0.813
Solyc02g021680.2 Solanum lycopersicum Solyc02g021680.2 I 0.813
TCM_026992 Theobroma cacao TCM_026992 I 0.813
Traes_5BL_B9DD3E76F Triticum aestivum Traes_5BL_B9DD3E76F I 0.813
Traes_5DL_E4A6D1889 Triticum aestivum Traes_5DL_E4A6D1889 I 0.813
Traes_6AL_A5FB7CFA5 Triticum aestivum Traes_6AL_A5FB7CFA5 I 0.813
Traes_6BL_EEAA2A7E3 Triticum aestivum Traes_6BL_EEAA2A7E3 I 0.813
Traes_6DL_D4F2CDDDC Triticum aestivum Traes_6DL_D4F2CDDDC I 0.813
TRIUR3_25300 Triticum urartu TRIUR3_25300 I 0.813
VIT_10s0003g05740 Vitis vinifera VIT_10s0003g05740 I 0.813
Ca_08049 Cicer arietinum Ca_08049 I 0.813
Cla010016 Citrullus lanatus Cla010016 I 0.813
27996.m000145 Ricinus communis 27996.m000145 I 0.813
cassava27495.m1 Manihot esculenta cassava27495.m1 I 0.813
cassava46743.m1 Manihot esculenta cassava46743.m1 I 0.813
Cucsa.048520 Cucumis sativus Cucsa.048520 I 0.813
mgf019715m Mimulus guttatus mgf019715m I 0.813
Aquca_030_00369 Aquilegia coerulea Aquca_030_00369 I 0.813
Bostr.23794s0620 Boechera stricta Bostr.23794s0620 I 0.813
Carubv10023228m.g Capsella rubella Carubv10023228m.g I 0.813
Ciclev10014984m.g Citrus clementina Ciclev10014984m.g I 0.813
Eucgr.K01971 Eucalyptus grandis Eucgr.K01971 I 0.813
evm.TU.supercontig_2011.1 Carica papaya evm.TU.supercontig_2011.1 I 0.813
gene20152-v1.0-hybrid Fragaria vesca gene20152-v1.0-hybrid I 0.813
Gorai.009G116800 Gossypium raimondii Gorai.009G116800 I 0.813
Gorai.011G006600 Gossypium raimondii Gorai.011G006600 I 0.813
Lus10038426.g Linum usitatissimum Lus10038426.g I 0.813
orange1.1g012605m.g Citrus sinensis orange1.1g012605m.g I 0.813
Pavir.Ga00745 Panicum virgatum Pavir.Ga00745 I 0.813
Pavir.Gb00758 Panicum virgatum Pavir.Gb00758 I 0.813
SapurV1A.0602s0100 Salix purpurea SapurV1A.0602s0100 I 0.813
PK06890.1 Cannabis sativa PK06890.1 I 0.813
chr6.LjT36O06.140.nd Lotus japonicus chr6.LjT36O06.140.nd I 0.813
Thhalv10016714m.g Eutrema salsugineum Thhalv10016714m.g I 0.812
AMTR_s00053p00025460 Amborella trichopoda AMTR_s00053p00025460 I 0.811
BGIOSGA013972 Oryza indica BGIOSGA013972 I 0.811
BRADI3G34567 Brachypodium distachyon BRADI3G34567 I 0.811
GSMUA_Achr11G06260_001 Musa acuminata GSMUA_Achr11G06260_001 I 0.811
GSMUA_Achr4G27420_001 Musa acuminata GSMUA_Achr4G27420_001 I 0.811
GSMUA_Achr8G14610_001 Musa acuminata GSMUA_Achr8G14610_001 I 0.811
MLOC_71477 Hordeum vulgare MLOC_71477 I 0.811
ONIVA03G43980 Oryza nivara ONIVA03G43980 I 0.811
ORUFI03G43260 Oryza rufipogon ORUFI03G43260 I 0.811
OS03G0855100 Oryza sativa OS03G0855100 I 0.811
PGSC0003DMG400028469 Solanum tuberosum PGSC0003DMG400028469 I 0.811
Solyc02g072190.2 Solanum lycopersicum Solyc02g072190.2 I 0.811
Traes_1AL_4E924201A Triticum aestivum Traes_1AL_4E924201A I 0.811
Traes_1BL_794E99FF5 Triticum aestivum Traes_1BL_794E99FF5 I 0.811
TRIUR3_03769 Triticum urartu TRIUR3_03769 I 0.811
Cla020059 Citrullus lanatus Cla020059 I 0.811
Cucsa.167500 Cucumis sativus Cucsa.167500 I 0.811
MDP0000168871 Malus domestica MDP0000168871 I 0.811
WRKY65 Arabidopsis thaliana AT1G29280 D 0.810
WRKY14 Arabidopsis thaliana AT1G30650 D 0.810
WRKY27 Arabidopsis thaliana AT5G52830 D 0.810
Bo2g047450 Brassica oleracea Bo2g047450 I 0.810
Bo3g143900 Brassica oleracea Bo3g143900 I 0.810
Bo5g058590 Brassica oleracea Bo5g058590 I 0.810
Bo5g063280 Brassica oleracea Bo5g063280 I 0.810
Bra010839 Brassica rapa Bra010839 I 0.810
Bra022612 Brassica rapa Bra022612 I 0.810
Bra032300 Brassica rapa Bra032300 I 0.810
Bra041029 Brassica rapa Bra041029 I 0.810
BRADI5G20290 Brachypodium distachyon BRADI5G20290 I 0.810
F775_16982 Aegilops tauschii F775_16982 I 0.810
WRKY65 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002596 I 0.810
WRKY27 Arabidopsis lyrata fgenesh2_kg.8__1163__AT5G52830.1 I 0.810
GLYMA05G25331 Glycine max GLYMA05G25331 I 0.810
GSMUA_Achr10G22020_001 Musa acuminata GSMUA_Achr10G22020_001 I 0.810
GSMUA_Achr5G09430_001 Musa acuminata GSMUA_Achr5G09430_001 I 0.810
GSMUA_Achr7G14300_001 Musa acuminata GSMUA_Achr7G14300_001 I 0.810
GSMUA_Achr8G19810_001 Musa acuminata GSMUA_Achr8G19810_001 I 0.810
PRUPE_ppa007745mg Prunus persica PRUPE_ppa007745mg I 0.810
PRUPE_ppa009647mg Prunus persica PRUPE_ppa009647mg I 0.810
WRKY14 Arabidopsis lyrata scaffold_103413.1 I 0.810
SELMODRAFT_129832 Selaginella moellendorffii SELMODRAFT_129832 I 0.810
SELMODRAFT_77979 Selaginella moellendorffii SELMODRAFT_77979 I 0.810
Pm018219 Prunus mume Pm018219 I 0.810
30026.m001461 Ricinus communis 30026.m001461 I 0.810
cassava34526.m1 Manihot esculenta cassava34526.m1 I 0.810
cassava7246.valid.m1 Manihot esculenta cassava7246.valid.m1 I 0.810
Aquca_013_00193 Aquilegia coerulea Aquca_013_00193 I 0.810
Bostr.15697s0224 Boechera stricta Bostr.15697s0224 I 0.810
Bostr.15697s0365 Boechera stricta Bostr.15697s0365 I 0.810
Bostr.7305s0070 Boechera stricta Bostr.7305s0070 I 0.810
Cagra.0084s0027 Capsella grandiflora Cagra.0084s0027 I 0.810
Cagra.1508s0138 Capsella grandiflora Cagra.1508s0138 I 0.810
Cagra.3517s0048 Capsella grandiflora Cagra.3517s0048 I 0.810
Carubv10009191m.g Capsella rubella Carubv10009191m.g I 0.810
Carubv10010013m.g Capsella rubella Carubv10010013m.g I 0.810
Carubv10026599m.g Capsella rubella Carubv10026599m.g I 0.810
MDP0000566005 Malus domestica MDP0000566005 I 0.810
MDP0000602139 Malus domestica MDP0000602139 I 0.810
MDP0000909869 Malus domestica MDP0000909869 I 0.810
Thhalv10007691m.g Eutrema salsugineum Thhalv10007691m.g I 0.810
Thhalv10013872m.g Eutrema salsugineum Thhalv10013872m.g I 0.810
AMTR_s00130p00044000 Amborella trichopoda AMTR_s00130p00044000 I 0.809
BGIOSGA000826 Oryza indica BGIOSGA000826 I 0.809
BGIOSGA033505 Oryza indica BGIOSGA033505 I 0.809
Bo4g108250 Brassica oleracea Bo4g108250 I 0.809
Bo7g043420 Brassica oleracea Bo7g043420 I 0.809
Bra014556 Brassica rapa Bra014556 I 0.809
Bra026228 Brassica rapa Bra026228 I 0.809
GRMZM2G138683 Zea mays GRMZM2G138683 I 0.809
GRMZM5G823157 Zea mays GRMZM5G823157 I 0.809
GSMUA_Achr10G01150_001 Musa acuminata GSMUA_Achr10G01150_001 I 0.809
GSMUA_Achr10G14710_001 Musa acuminata GSMUA_Achr10G14710_001 I 0.809
GSMUA_Achr5G03670_001 Musa acuminata GSMUA_Achr5G03670_001 I 0.809
GSMUA_Achr9G05460_001 Musa acuminata GSMUA_Achr9G05460_001 I 0.809
LPERR01G26540 Leersia perrieri LPERR01G26540 I 0.809
LPERR10G15640 Leersia perrieri LPERR10G15640 I 0.809
OB01G39870 Oryza brachyantha OB01G39870 I 0.809
OB10G26930 Oryza brachyantha OB10G26930 I 0.809
OBART01G30930 Oryza barthii OBART01G30930 I 0.809
OBART10G19790 Oryza barthii OBART10G19790 I 0.809
OGLUM01G35080 Oryza glumaepatula OGLUM01G35080 I 0.809
OGLUM10G19850 Oryza glumaepatula OGLUM10G19850 I 0.809
OLONG_006318 Oryza longistaminata OLONG_006318 I 0.809
OLONG_007204 Oryza longistaminata OLONG_007204 I 0.809
OMERI01G28060 Oryza meridionalis OMERI01G28060 I 0.809
OMERI10G15020 Oryza meridionalis OMERI10G15020 I 0.809
ONIVA01G35310 Oryza nivara ONIVA01G35310 I 0.809
ONIVA08G27000 Oryza nivara ONIVA08G27000 I 0.809
OPUNC01G29980 Oryza punctata OPUNC01G29980 I 0.809
OPUNC10G18230 Oryza punctata OPUNC10G18230 I 0.809
ORGLA01G0253700 Oryza glaberrima ORGLA01G0253700 I 0.809
ORGLA10G0149800 Oryza glaberrima ORGLA10G0149800 I 0.809
ORUFI01G34080 Oryza rufipogon ORUFI01G34080 I 0.809
ORUFI10G21010 Oryza rufipogon ORUFI10G21010 I 0.809
OS01G0750100 Oryza sativa OS01G0750100 I 0.809
POPTR_0004s05920 Populus trichocarpa POPTR_0004s05920 I 0.809
POPTR_0011s06990 Populus trichocarpa POPTR_0011s06990 I 0.809
Sb01g027770 Sorghum bicolor Sb01g027770 I 0.809
Sb04g030930 Sorghum bicolor Sb04g030930 I 0.809
Si017095m.g Setaria italica Si017095m.g I 0.809
Si038537m.g Setaria italica Si038537m.g I 0.809
WRKY69 Vitis vinifera VIT_10s0003g01600 I 0.809
Pm010616 Prunus mume Pm010616 I 0.809
cassava24801.valid.m1 Manihot esculenta cassava24801.valid.m1 I 0.809
Ciclev10016229m.g Citrus clementina Ciclev10016229m.g I 0.809
Eucgr.E02783 Eucalyptus grandis Eucgr.E02783 I 0.809
evm.TU.supercontig_7.92 Carica papaya evm.TU.supercontig_7.92 I 0.809
gene29704-v1.0-hybrid Fragaria vesca gene29704-v1.0-hybrid I 0.809
Gorai.009G160800 Gossypium raimondii Gorai.009G160800 I 0.809
Gorai.010G161000 Gossypium raimondii Gorai.010G161000 I 0.809
MDP0000133918 Malus domestica MDP0000133918 I 0.809
orange1.1g022353m.g Citrus sinensis orange1.1g022353m.g I 0.809
Pavir.Ab02810 Panicum virgatum Pavir.Ab02810 I 0.809
Pavir.Ea02735 Panicum virgatum Pavir.Ea02735 I 0.809
Pavir.Eb03138 Panicum virgatum Pavir.Eb03138 I 0.809
Pavir.Ib03051 Panicum virgatum Pavir.Ib03051 I 0.809
Pavir.J03888 Panicum virgatum Pavir.J03888 I 0.809
SapurV1A.0181s0110 Salix purpurea SapurV1A.0181s0110 I 0.809
SapurV1A.3189s0010 Salix purpurea SapurV1A.3189s0010 I 0.809
SapurV1A.3459s0010 Salix purpurea SapurV1A.3459s0010 I 0.809
BGIOSGA007926 Oryza indica BGIOSGA007926 I 0.808
BRADI3G09810 Brachypodium distachyon BRADI3G09810 I 0.808
GRMZM2G038158 Zea mays GRMZM2G038158 I 0.808
GRMZM2G048450 Zea mays GRMZM2G048450 I 0.808
GRMZM2G383594 Zea mays GRMZM2G383594 I 0.808
GSMUA_Achr11G17950_001 Musa acuminata GSMUA_Achr11G17950_001 I 0.808
LPERR02G09570 Leersia perrieri LPERR02G09570 I 0.808
MTR_8g028565 Medicago truncatula MTR_8g028565 I 0.808
OB02G20150 Oryza brachyantha OB02G20150 I 0.808
OBART02G11480 Oryza barthii OBART02G11480 I 0.808
OGLUM02G11370 Oryza glumaepatula OGLUM02G11370 I 0.808
OMERI02G12140 Oryza meridionalis OMERI02G12140 I 0.808
ONIVA02G12780 Oryza nivara ONIVA02G12780 I 0.808
ORGLA02G0103000 Oryza glaberrima ORGLA02G0103000 I 0.808
ORUFI02G11490 Oryza rufipogon ORUFI02G11490 I 0.808
OS02G0265200 Oryza sativa OS02G0265200 I 0.808
PGSC0003DMG400000064 Solanum tuberosum PGSC0003DMG400000064 I 0.808
PRUPE_ppa025586mg Prunus persica PRUPE_ppa025586mg I 0.808
Sb04g009800 Sorghum bicolor Sb04g009800 I 0.808
Si017529m.g Setaria italica Si017529m.g I 0.808
Solyc01g095100.2 Solanum lycopersicum Solyc01g095100.2 I 0.808
Solyc10g011910.2 Solanum lycopersicum Solyc10g011910.2 I 0.808
WRKY22 Vitis vinifera VIT_15s0046g02190 I 0.808
Ca_06984 Cicer arietinum Ca_06984 I 0.808
Pm014006 Prunus mume Pm014006 I 0.808
cassava39274.m1 Manihot esculenta cassava39274.m1 I 0.808
mgf007569m Mimulus guttatus mgf007569m I 0.808
Eucgr.E00098 Eucalyptus grandis Eucgr.E00098 I 0.808
Gorai.004G160100 Gossypium raimondii Gorai.004G160100 I 0.808
Gorai.007G103400 Gossypium raimondii Gorai.007G103400 I 0.808
Pavir.Eb01390 Panicum virgatum Pavir.Eb01390 I 0.808
Thhalv10008510m.g Eutrema salsugineum Thhalv10008510m.g I 0.808