Pavir.J18104 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.J18104 T356839_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY17
M02550_2.00 		Arabidopsis thaliana
NNDGTCAAHN
NDTTGACHNN		 PBM
Weirauch et al.(2014)
pTH8088 		0.804 1.000
WRKY11
M02559_2.00 		Arabidopsis thaliana
NDGTCAAHNN
NNDTTGACHN		 PBM
Weirauch et al.(2014)
pTH8091 		0.804 1.000
WRKY11
M07415_2.00 		Arabidopsis thaliana
NHAAAGTCAACBNH
DNVGTTGACTTTDN		 Dap-seq
OMalley et al.(2016)
WRKY11_col_a 		0.804 1.000
WRKY17
M07385_2.00 		Arabidopsis thaliana
NHAAAGTCAACRNN
NNYGTTGACTTTDN		 Dap-seq
OMalley et al.(2016)
WRKY17_col_a 		0.804 1.000
WRKY17
M07386_2.00 		Arabidopsis thaliana
NMAAAGTCAACGN
NCGTTGACTTTKN		 Dap-seq
OMalley et al.(2016)
WRKY17_colamp_a 		0.804 1.000
WRKY11
M11464_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY11_Q2 		0.804 1.000
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J18104.1.p WRKY 290 310

Links

Other WRKY family TFs
Other Panicum virgatum TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY39 Arabidopsis thaliana AT3G04670 I 0.804
WRKY11 Arabidopsis thaliana AT4G31550 D 0.804
WRKY74 Arabidopsis thaliana AT5G28650 I 0.804
BGIOSGA035895 Oryza indica BGIOSGA035895 I 0.804
BRADI1G14300 Brachypodium distachyon BRADI1G14300 I 0.804
F775_32041 Aegilops tauschii F775_32041 I 0.804
F775_32103 Aegilops tauschii F775_32103 I 0.804
WRKY39 Arabidopsis lyrata fgenesh2_kg.3__432__AT3G04670.1 I 0.804
GLYMA17G35750 Glycine max GLYMA17G35750 N 0.804
GSMUA_Achr10G08720_001 Musa acuminata GSMUA_Achr10G08720_001 I 0.804
GSMUA_Achr9G10740_001 Musa acuminata GSMUA_Achr9G10740_001 I 0.804
LPERR12G14970 Leersia perrieri LPERR12G14970 I 0.804
MLOC_56247 Hordeum vulgare MLOC_56247 I 0.804
MLOC_77258 Hordeum vulgare MLOC_77258 I 0.804
OB12G24610 Oryza brachyantha OB12G24610 I 0.804
OBART12G17890 Oryza barthii OBART12G17890 I 0.804
OGLUM12G19470 Oryza glumaepatula OGLUM12G19470 I 0.804
OMERI12G12480 Oryza meridionalis OMERI12G12480 I 0.804
ONIVA12G16560 Oryza nivara ONIVA12G16560 I 0.804
OPUNC12G16220 Oryza punctata OPUNC12G16220 I 0.804
ORGLA12G0153000 Oryza glaberrima ORGLA12G0153000 I 0.804
ORUFI12G19820 Oryza rufipogon ORUFI12G19820 I 0.804
OS12G0597700 Oryza sativa OS12G0597700 I 0.804
PGSC0003DMG400015076 Solanum tuberosum PGSC0003DMG400015076 I 0.804
POPTR_0005s05700 Populus trichocarpa POPTR_0005s05700 I 0.804
Sb01g014180 Sorghum bicolor Sb01g014180 I 0.804
Sb08g020270 Sorghum bicolor Sb08g020270 I 0.804
Si022461m.g Setaria italica Si022461m.g I 0.804
Si036408m.g Setaria italica Si036408m.g I 0.804
Solyc09g066010.2 Solanum lycopersicum Solyc09g066010.2 I 0.804
TCM_026314 Theobroma cacao TCM_026314 I 0.804
Traes_4AL_98B1C762B Triticum aestivum Traes_4AL_98B1C762B I 0.804
Traes_4BS_CE839571B Triticum aestivum Traes_4BS_CE839571B I 0.804
Traes_4DS_3BE557D5C Triticum aestivum Traes_4DS_3BE557D5C I 0.804
Traes_5AS_433D3E526 Triticum aestivum Traes_5AS_433D3E526 I 0.804
Traes_5BS_E0345D5DF Triticum aestivum Traes_5BS_E0345D5DF I 0.804
Traes_5DS_D83DEA9B0 Triticum aestivum Traes_5DS_D83DEA9B0 I 0.804
TRIUR3_20596 Triticum urartu TRIUR3_20596 I 0.804
estExt_Genewise1.C_650158 Physcomitrella patens estExt_Genewise1.C_650158 I 0.804
Bostr.2570s0232 Boechera stricta Bostr.2570s0232 I 0.804
Cagra.3807s0027 Capsella grandiflora Cagra.3807s0027 I 0.804
Cagra.4031s0005 Capsella grandiflora Cagra.4031s0005 I 0.804
Carubv10015434m.g Capsella rubella Carubv10015434m.g I 0.804
Carubv10023561m.g Capsella rubella Carubv10023561m.g I 0.804
Eucgr.I00882 Eucalyptus grandis Eucgr.I00882 I 0.804
evm.TU.supercontig_768.1 Carica papaya evm.TU.supercontig_768.1 I 0.804
Gorai.007G278400 Gossypium raimondii Gorai.007G278400 I 0.804
Gorai.009G276100 Gossypium raimondii Gorai.009G276100 I 0.804
Pavir.Ia01239 Panicum virgatum Pavir.Ia01239 I 0.804
Pavir.Ib03991 Panicum virgatum Pavir.Ib03991 I 0.804
Pavir.J38176 Panicum virgatum Pavir.J38176 I 0.804
SapurV1A.1571s0090 Salix purpurea SapurV1A.1571s0090 I 0.804
Thhalv10021115m.g Eutrema salsugineum Thhalv10021115m.g I 0.804
chr5.CM0852.80.nd Lotus japonicus chr5.CM0852.80.nd I 0.804
PDK_20s1508051g002 Phoenix dactylifera PDK_20s1508051g002 I 0.804