YRM1 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YOR172W T388375_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YRM1
M00106_2.00		 Saccharomyces cerevisiae
RCGGADAT
ATHTCCGY		 PBM
Badis et al.(2008)
YRM1_2064		 (Direct) (Direct)
YRM1
M01595_2.00		 Saccharomyces cerevisiae
NNCGGAAATANNN
NNNTATTTCCGNN		 PBM
Zhu et al.(2009)
Yrm1		 (Direct) (Direct)
YRM1
M07533_2.00		 Saccharomyces cerevisiae
VCGGARAT
ATYTCCGB		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0438.1		 (Direct) (Direct)
YRM1
M08692_2.00		 Saccharomyces cerevisiae
SDNNNRCGGRWAWWVNDNNKW
WMNNHNBWWTWYCCGYNNNHS		 Misc
DeBoer et al.(2011)
YOR172W_813		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00106_2.00 Zinc cluster 28 67
M01595_2.00 Zinc cluster 29 68

DNA Binding Domains

Protein ID Domain From To Sequence
YOR172W Zinc cluster 29 68

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SKUD_205008 Saccharomyces kudriavzevii SKUD_205008 I 0.612
TDEL_0A02690 Torulaspora delbrueckii TDEL_0A02690 I 0.561
20955_YOR172W Saccharomyces paradoxus 20955_YOR172W I 0.541
KAFR_0G02540 Kazachstania africana KAFR_0G02540 I 0.538