5688_YDR421W (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 5688_YDR421W T390864_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARO80
M01577_2.00 		Saccharomyces cerevisiae
NNCGGNDNN
NNHNCCGNN		 PBM
Zhu et al.(2009)
Aro80 		0.641 0.846
ARO80
M08656_2.00 		Saccharomyces cerevisiae
CGGHHVNBNDCGG
CCGHNVNBDDCCG		 Misc
DeBoer et al.(2011)
YDR421W_1509 		0.641 0.846
ARO80
M08657_2.00 		Saccharomyces cerevisiae
CGGYWANNNNCGGYWANNNNCGGYWA
TWRCCGNNNNTWRCCGNNNNTWRCCG		 Misc
DeBoer et al.(2011)
YDR421W_725 		0.641 0.846
ARO80
M08658_2.00 		Saccharomyces cerevisiae
BNNNNNBCTCGGBWABDNNDN
NHNNHVTWVCCGAGVNNNNNV		 Misc
DeBoer et al.(2011)
YDR421W_877 		0.641 0.846
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
5688_YDR421W Zinc cluster 23 67

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARO80 Saccharomyces cerevisiae YDR421W D 0.641
SKUD_181303 Saccharomyces kudriavzevii SKUD_181303 I 0.597
5419_Multiple Saccharomyces bayanus 5419_Multiple N 0.543