CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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hdx
(
Danio rerio
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSDARG00000079382
T208705_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to human HDX (highly divergent homeobox). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hdx
M00463_2.00
Mus musculus
HNWYHNN
NNDRWND
PBM
Berger et al.(2008)
Hdx_3845
0.816
0.873
HDX
M01246_2.00
Homo sapiens
HNNNNNN
NNNNNND
PBM
Lambert et al.(2019)
pTH11271
0.816
0.864
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000102393
Homeodomain
14
71
NLRSVFTAEQQRILERYYENGMTNQSKSCFQLILQCAQETKLDFSVVRTWVGNKRRKL
ENSDARP00000102393
Homeodomain
421
480
QDRTQFSDRDLYTLKRYWDNGMTSLGSLCKEKIAAAAIQLNVDTEIIKTWIGNRRRKYRL
ENSDARP00000130885
Homeodomain
14
71
NLRSVFTAEQQRILERYYENGMTNQSKSCFQLILQCAQETKLDFSVVRTWVGNKRRKL
ENSDARP00000130885
Homeodomain
421
480
QDRTQFSDRDLYTLKRYWDNGMTSLGSLCKEKIAAAAIQLNVDTEIIKTWIGNRRRKYRL
Links
Other
Homeodomain
family TFs
Other
Danio rerio
TFs
58 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy