CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo8g049940
(
Brassica oleracea
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Bo8g049940
T352198_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY28
M07406_2.00
Arabidopsis thaliana
HAAAGTCAAMNNH
DNNKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY28_col_a
0.878
0.966
WRKY28
M07407_2.00
Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY28_colamp_a
0.878
0.966
WRKY8
M02564_2.00
Arabidopsis thaliana
NRGTCAAHN
NDTTGACYN
PBM
Weirauch et al.(2014)
pTH7554
0.878
0.948
WRKY8
M07428_2.00
Arabidopsis thaliana
NAAAAGTCAACRNHW
WDNYGTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY8_colamp_a
0.878
0.948
WRKY8
M07429_2.00
Arabidopsis thaliana
NNVAAAGTCAACRNH
DNYGTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY8_col
0.878
0.948
WRKY48
M02565_2.00
Arabidopsis thaliana
NNVGTCADNN
NNHTGACBNN
PBM
Weirauch et al.(2014)
pTH7552
0.872
0.810
WRKY71
M07374_2.00
Arabidopsis thaliana
HAAAGTCAAMN
NKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY71_col_a
0.871
0.914
WRKY23
M02556_2.00
Arabidopsis thaliana
RGTCAACG
CGTTGACY
PBM
Weirauch et al.(2014)
pTH7387
0.859
0.810
WRKY23
M01089_2.00
Arabidopsis thaliana
NRGTCAAM
KTTGACYN
PBM
Sullivan et al.(2014)
pTH7671
0.859
0.810
WRKY57
M02547_2.00
Arabidopsis thaliana
NNRGTCAAHN
NDTTGACYNN
PBM
Weirauch et al.(2014)
pTH7917
0.856
0.793
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.844
0.690
WRKY65
M07372_2.00
Arabidopsis thaliana
NWWAGTCAACG
CGTTGACTWWN
Dap-seq
OMalley et al.(2016)
WRKY65_col_a
0.837
0.569
WRKY65
M07373_2.00
Arabidopsis thaliana
NAAAGTCAACGN
NCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY65_colamp_a
0.837
0.569
WRKY27
M02566_2.00
Arabidopsis thaliana
NNGTCHDNN
NNHDGACNN
PBM
Weirauch et al.(2014)
pTH8188
0.836
0.569
WRKY27
M07430_2.00
Arabidopsis thaliana
MAAAGTCAACKNH
DNMGTTGACTTTK
Dap-seq
OMalley et al.(2016)
WRKY27_col_a
0.836
0.569
WRKY27
M07431_2.00
Arabidopsis thaliana
HAAAGTCAACKNH
DNMGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY27_colamp_a
0.836
0.569
WRKY21
M02553_2.00
Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN
PBM
Weirauch et al.(2014)
pTH7422
0.834
0.586
WRKY21
M07389_2.00
Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a
0.834
0.586
WRKY21
M07390_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_col
0.834
0.586
WRKY22
M02557_2.00
Arabidopsis thaliana
NNNKTMHDNN
NNHDKAMNNN
PBM
Weirauch et al.(2014)
pTH7320
0.833
0.569
WRKY22
M07400_2.00
Arabidopsis thaliana
AAAAGTCAACKNH
DNMGTTGACTTTT
Dap-seq
OMalley et al.(2016)
WRKY22_colamp_a
0.833
0.569
WRKY22
M07401_2.00
Arabidopsis thaliana
NAAAGTCAACKNH
DNMGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY22_col
0.833
0.569
WRKY14
M00731_2.00
Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN
PBM
Chang et al.(2013)
pTH7570
0.829
0.534
WRKY14
M07375_2.00
Arabidopsis thaliana
NAAAGTCAACGNN
NNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY14_col_a
0.829
0.534
WRKY14
M07376_2.00
Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY14_colamp_a
0.829
0.534
WRKY11
M02559_2.00
Arabidopsis thaliana
NDGTCAAHNN
NNDTTGACHN
PBM
Weirauch et al.(2014)
pTH8091
0.827
0.569
WRKY11
M07415_2.00
Arabidopsis thaliana
NHAAAGTCAACBNH
DNVGTTGACTTTDN
Dap-seq
OMalley et al.(2016)
WRKY11_col_a
0.827
0.569
WRKY11
M11464_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY11_Q2
0.827
0.569
WRKY17
M02550_2.00
Arabidopsis thaliana
NNDGTCAAHN
NDTTGACHNN
PBM
Weirauch et al.(2014)
pTH8088
0.826
0.569
WRKY17
M07385_2.00
Arabidopsis thaliana
NHAAAGTCAACRNN
NNYGTTGACTTTDN
Dap-seq
OMalley et al.(2016)
WRKY17_col_a
0.826
0.569
WRKY17
M07386_2.00
Arabidopsis thaliana
NMAAAGTCAACGN
NCGTTGACTTTKN
Dap-seq
OMalley et al.(2016)
WRKY17_colamp_a
0.826
0.569
WRKY75
M02562_2.00
Arabidopsis thaliana
NRGTCAAM
KTTGACYN
PBM
Weirauch et al.(2014)
pTH8821
0.826
0.690
WRKY75
M07420_2.00
Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY75_col_a
0.826
0.690
WRKY75
M07421_2.00
Arabidopsis thaliana
VAAAGTCAACRNH
DNYGTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY75_colamp_a
0.826
0.690
Q40828_PETCR
M11467_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY_Q2
0.824
0.552
WRKY43
M02555_2.00
Arabidopsis thaliana
NRGTCAAHNN
NNDTTGACYN
PBM
Weirauch et al.(2014)
pTH7373
0.823
0.690
WRKY43
M07393_2.00
Arabidopsis thaliana
NNAAAGTCAACGNN
NNCGTTGACTTTNN
Dap-seq
OMalley et al.(2016)
WRKY43_col_a
0.823
0.690
WRKY43
M07394_2.00
Arabidopsis thaliana
NNNNAAAGTCAACGN
NCGTTGACTTTNNNN
Dap-seq
OMalley et al.(2016)
WRKY43_colamp_a
0.823
0.690
WRKY45
M00899_2.00
Arabidopsis thaliana
NNRGTCAAMGN
NCKTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY45
0.822
0.638
WRKY45
M07397_2.00
Arabidopsis thaliana
NAAAAGTCAAMD
HKTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY45_col_a
0.822
0.638
WRKY45
M07398_2.00
Arabidopsis thaliana
MAAAGTCAAMV
BKTTGACTTTK
Dap-seq
OMalley et al.(2016)
WRKY45_colamp_a
0.822
0.638
WRKY24
M07426_2.00
Arabidopsis thaliana
NNNAWAGTCAACGN
NCGTTGACTWTNNN
Dap-seq
OMalley et al.(2016)
WRKY24_col_a
0.821
0.707
WRKY24
M07427_2.00
Arabidopsis thaliana
NAWAGTCAACGNH
DNCGTTGACTWTN
Dap-seq
OMalley et al.(2016)
WRKY24_colamp_a
0.821
0.707
WRKY29
M02558_2.00
Arabidopsis thaliana
NNNGTCHDNN
NNHDGACNNN
PBM
Weirauch et al.(2014)
pTH9604
0.818
0.534
WRKY29
M07410_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY29_col_a
0.818
0.534
WRKY29
M07411_2.00
Arabidopsis thaliana
HWWAGTCAAMDNN
NNHKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY29_colamp_a
0.818
0.534
WRKY15
M02549_2.00
Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN
PBM
Weirauch et al.(2014)
pTH7602
0.818
0.534
WRKY15
M07383_2.00
Arabidopsis thaliana
AAAAGTCAACKN
NMGTTGACTTTT
Dap-seq
OMalley et al.(2016)
WRKY15_colamp_a
0.818
0.534
WRKY15
M07384_2.00
Arabidopsis thaliana
NWAAGTCAACB
VGTTGACTTWN
Dap-seq
OMalley et al.(2016)
WRKY15_col_b
0.818
0.534
WRKY12
M00898_2.00
Arabidopsis thaliana
NHGGTCAACNN
NNGTTGACCDN
PBM
Franco-Zorrilla et al.(2014)
WRKY12
0.817
0.690
WRKY50
M07424_2.00
Arabidopsis thaliana
NNAAAAGTCAAMN
NKTTGACTTTTNN
Dap-seq
OMalley et al.(2016)
WRKY50_col_a
0.816
0.638
WRKY50
M07425_2.00
Arabidopsis thaliana
NWAAGTCAANN
NNTTGACTTWN
Dap-seq
OMalley et al.(2016)
WRKY50_colamp_a
0.816
0.638
WRKY7
M07412_2.00
Arabidopsis thaliana
NNDDDNNNNMAAAGTCAACGV
BCGTTGACTTTKNNNNHHHNN
Dap-seq
OMalley et al.(2016)
WRKY7_colamp_a
0.813
0.534
WRKY7
M07413_2.00
Arabidopsis thaliana
NAAAAGTCAACKNN
NNMGTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY7_col
0.813
0.534
fgenesh1_pg.C_Chr_11.0001000193
M02570_2.00
Ostreococcus tauri
NRGTCARNN
NNYTGACYN
PBM
Weirauch et al.(2014)
pTH9432
0.810
0.552
PK25870.1
M01325_2.00
Cannabis sativa
NRGTCAAM
KTTGACYN
PBM
Lambert et al.(2019)
pTH10156
0.808
0.621
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo8g049940.1
WRKY
158
215
EDGYRWRKYGQKAVKSSPYPRSYYRCTTQKCNVKKRVERSLQDPTVVITTYEGQHNHP
Links
Other
WRKY
family TFs
Other
Brassica oleracea
TFs
2148 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy