CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10009049m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10009049m.g
T297484_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.918
0.496
NAC001
M00969_2.00
Arabidopsis thaliana
NYACGBHANN
NNTDVCGTRN
PBM
Lindemose et al.(2014)
FL092
0.899
0.783
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10009049m
NAC/NAM
4
138
KVGFGFRPNDEELVGHYLRDKIQGNTSLLQVAISEVNICSYDPWDLRYQSKYKSMDPMWYFFSRRENKYGNGNRQIRTTRSGKWKLTGESVDVKDQWGISSGFPGKIGHKRVLVFLDARFPDKPKSDWVIHEFHY
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
156 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy