RAP2-4 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT1G78080 T000444_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN

NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.848 0.960
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.848 0.960
AT5G65130
M06686_2.00
Arabidopsis thaliana
YCDYCDCCRCCGCCN

NGGCGGYGGHGRHGR
Dap-seq
OMalley et al.(2016)
At5g65130_col_a
0.721 0.860
AT5G65130
M06687_2.00
Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW

WKGKCGGYGSHDNNDNNNN
Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a
0.721 0.860
ERF054
M06647_2.00
Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC

GDCGGYGSHDDNNNNNNNNN
Dap-seq
OMalley et al.(2016)
At4g28140_col_a
0.684 0.820
ERF054
M06648_2.00
Arabidopsis thaliana
NNNNHDBCRCCGHCM

KGDCGGYGVHDNNNN
Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a
0.684 0.820
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN

NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.683 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01612_2.00 AP2 51 102

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G78080.1 AP2 150 201

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

457 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACRE_075970 Acremonium chrysogenum ACRE_075970 N 0.000
SAPIO_CDS2662 Scedosporium apiospermum SAPIO_CDS2662 N 0.000
GLRG_03355 Colletotrichum graminicola GLRG_03355 N 0.000
FPSE_03123 Fusarium pseudograminearum FPSE_03123 N 0.000
FOXG_05478 Fusarium oxysporum FOXG_05478 N 0.000
FGRRES_17297 Fusarium graminearum FGRRES_17297 N 0.000
FFUJ_07517 Fusarium fujikuroi FFUJ_07517 N 0.000
FFUJ_06862 Fusarium fujikuroi FFUJ_06862 N 0.000
CSUB01_04164 Colletotrichum sublineola CSUB01_04164 N 0.000
Cob_09725 Colletotrichum orbiculare Cob_09725 N 0.000
CH063_06450 Colletotrichum higginsianum CH063_06450 N 0.000
CGGC5_14891 Colletotrichum gloeosporioides CGGC5_14891 N 0.000
CFIO01_04405 Colletotrichum fioriniae CFIO01_04405 N 0.000
e_gw1.5.1322.1 Nectria haematococca e_gw1.5.1322.1 N 0.000