CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ERF1B
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT3G23240
T000475_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
(Direct)
(Direct)
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
(Direct)
(Direct)
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD
HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
(Direct)
(Direct)
ERF1B
M09703_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
(Direct)
(Direct)
ERF1B
M09704_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF15
M00718_2.00
Arabidopsis thaliana
NGSCGSCB
VGSCGSCN
PBM
Chang et al.(2013)
pTH7336
0.749
0.857
ERF15
M06604_2.00
Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF15_colamp_a
0.749
0.857
ERF15
M06605_2.00
Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN
Dap-seq
OMalley et al.(2016)
ERF15_col
0.749
0.857
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.736
0.776
P93392_TOBAC
M09731_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$OPBP1_01
0.727
0.878
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.724
0.816
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.719
0.837
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM
KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.711
0.735
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.711
0.735
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.711
0.735
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.707
0.694
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.707
0.694
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.703
0.857
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.703
0.857
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.702
0.755
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.695
0.857
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.695
0.857
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.695
0.857
Q84J59_MAIZE
M09717_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.695
0.653
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.694
0.735
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.692
0.755
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.692
0.755
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.692
0.755
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD
HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.691
0.673
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN
NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.691
0.673
LEP
M06661_2.00
Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN
Dap-seq
OMalley et al.(2016)
LEP_col_a
0.690
0.694
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.689
0.796
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.688
0.755
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.688
0.755
0100010458
M01644_2.00
Ostreococcus tauri
MGCCGSCR
YGSCGGCK
PBM
Weirauch et al.(2014)
pTH9447
0.684
0.735
ERF098
M01618_2.00
Arabidopsis thaliana
NNGCCGNC
GNCGGCNN
PBM
Weirauch et al.(2014)
pTH8259
0.683
0.714
HRE1
M06595_2.00
Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHKVNDN
Dap-seq
OMalley et al.(2016)
ERF73_col_a
0.681
0.653
HRE1
M06596_2.00
Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY
RYGGCGGCGGHGRNDKHDRND
Dap-seq
OMalley et al.(2016)
ERF73_colamp_a
0.681
0.653
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.681
0.776
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.681
0.653
O65242_TOBAC
M09730_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.678
0.633
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.678
0.714
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.677
0.735
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD
HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.677
0.816
For this family, TFs with SR scores >
0.677
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01619_2.00
AP2
51
103
KSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGS
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G23240.1
AP2
80
132
KSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGS
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
1241 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy