AT4G13040 (Arabidopsis thaliana)

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT4G13040 T000485_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G13040.1 AP2 115 163
AT4G13040.2 AP2 59 107
AT4G13040.3 AP2 135 183
AT4G13040.4 AP2 85 133
AT4G13040.5 AP2 59 107
AT4G13040.6 AP2 59 107
AT4G13040.7 AP2 115 163
AT4G13040.8 AP2 85 133


Other AP2 family TFs
Other Arabidopsis thaliana TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
chr3.CM0423.200.nd Lotus japonicus chr3.CM0423.200.nd N 0.735
Carubv10005663m.g Capsella rubella Carubv10005663m.g N 0.778
Cagra.2997s0002 Capsella grandiflora Cagra.2997s0002 N 0.778
Bostr.2021s0045 Boechera stricta Bostr.2021s0045 N 0.778
mgf007349m Mimulus guttatus mgf007349m N 0.726
mgf003727m Mimulus guttatus mgf003727m N 0.736
mgf003491m Mimulus guttatus mgf003491m N 0.726
estExt_fgenesh1_pg.C_930051 Physcomitrella patens estExt_fgenesh1_pg.C_930051 N 0.680
e_gw1.317.27.1 Physcomitrella patens e_gw1.317.27.1 N 0.719
Cucsa.150110 Cucumis sativus Cucsa.150110 N 0.716
Cucsa.078000 Cucumis sativus Cucsa.078000 N 0.710
cassava6828.valid.m1 Manihot esculenta cassava6828.valid.m1 N 0.732
cassava38073.valid.m1 Manihot esculenta cassava38073.valid.m1 N 0.723
Pm020315 Prunus mume Pm020315 N 0.738
Cla015151 Citrullus lanatus Cla015151 N 0.710
Cla002744 Citrullus lanatus Cla002744 N 0.735
Ca_17230 Cicer arietinum Ca_17230 N 0.719
Ciclev10021891m.g Citrus clementina Ciclev10021891m.g N 0.738
Eucgr.K02136 Eucalyptus grandis Eucgr.K02136 N 0.700
chr1.LjT46N10.100.nd Lotus japonicus chr1.LjT46N10.100.nd N 0.732
PK01824.1 Cannabis sativa PK01824.1 N 0.767
Thhalv10026242m.g Eutrema salsugineum Thhalv10026242m.g N 0.778
Pavir.J28064 Panicum virgatum Pavir.J28064 N 0.715
Pavir.Aa01947 Panicum virgatum Pavir.Aa01947 N 0.715
orange1.1g025914m.g Citrus sinensis orange1.1g025914m.g N 0.738
MDP0000675982 Malus domestica MDP0000675982 N 0.732
MDP0000300382 Malus domestica MDP0000300382 N 0.732
MDP0000129941 Malus domestica MDP0000129941 N 0.732
Lus10022769.g Linum usitatissimum Lus10022769.g N 0.729
Lus10011836.g Linum usitatissimum Lus10011836.g N 0.729
Gorai.007G156300 Gossypium raimondii Gorai.007G156300 N 0.732
Gorai.001G231300 Gossypium raimondii Gorai.001G231300 N 0.738
Gorai.001G188300 Gossypium raimondii Gorai.001G188300 N 0.732
Gorai.001G105100 Gossypium raimondii Gorai.001G105100 N 0.738
evm.TU.supercontig_21.106 Carica papaya evm.TU.supercontig_21.106 N 0.738
Ca_11707 Cicer arietinum Ca_11707 N 0.735
VIT_00s0184g00010 Vitis vinifera VIT_00s0184g00010 N 0.716
OBART02G17450 Oryza barthii OBART02G17450 N 0.721
OB02G25330 Oryza brachyantha OB02G25330 N 0.721
MTR_8g012655 Medicago truncatula MTR_8g012655 N 0.732
MTR_7g055857 Medicago truncatula MTR_7g055857 N 0.709
LPERR02G13930 Leersia perrieri LPERR02G13930 N 0.721
GSMUA_Achr9G01590_001 Musa acuminata GSMUA_Achr9G01590_001 N 0.716
GSMUA_Achr8G00300_001 Musa acuminata GSMUA_Achr8G00300_001 N 0.699
GSMUA_Achr6G06510_001 Musa acuminata GSMUA_Achr6G06510_001 N 0.699
GLYMA18G33460 Glycine max GLYMA18G33460 N 0.722
GLYMA08G46250 Glycine max GLYMA08G46250 N 0.726
BRADI3G43822 Brachypodium distachyon BRADI3G43822 N 0.715
Bra034895 Brassica rapa Bra034895 N 0.778
Bo8g033910 Brassica oleracea Bo8g033910 N 0.778
Bo11579s010 Brassica oleracea Bo11579s010 N 0.762
BGIOSGA008254 Oryza indica BGIOSGA008254 N 0.721
OGLUM02G17700 Oryza glumaepatula OGLUM02G17700 N 0.721
OLONG_009588 Oryza longistaminata OLONG_009588 N 0.711
Traes_6DS_43372C0A6 Triticum aestivum Traes_6DS_43372C0A6 N 0.715
Traes_6AL_13895C140 Triticum aestivum Traes_6AL_13895C140 N 0.715
TCM_002835 Theobroma cacao TCM_002835 N 0.738
Solyc09g059510.2 Solanum lycopersicum Solyc09g059510.2 N 0.727
Si018306m.g Setaria italica Si018306m.g N 0.715
SELMODRAFT_443366 Selaginella moellendorffii SELMODRAFT_443366 N 0.702
SELMODRAFT_420254 Selaginella moellendorffii SELMODRAFT_420254 N 0.702
Sb04g020150 Sorghum bicolor Sb04g020150 N 0.715
PRUPE_ppa011812mg Prunus persica PRUPE_ppa011812mg N 0.738
POPTR_0002s24750 Populus trichocarpa POPTR_0002s24750 N 0.738
PGSC0003DMG400017485 Solanum tuberosum PGSC0003DMG400017485 N 0.727
OS02G0499000 Oryza sativa OS02G0499000 N 0.721
ORUFI02G18290 Oryza rufipogon ORUFI02G18290 N 0.721
ORGLA02G0152600 Oryza glaberrima ORGLA02G0152600 N 0.721
OPUNC02G15530 Oryza punctata OPUNC02G15530 N 0.721
ONIVA02G18870 Oryza nivara ONIVA02G18870 N 0.721
AMTR_s00013p00252260 Amborella trichopoda AMTR_s00013p00252260 N 0.726