Bo3g099090 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo3g099090 T000788_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG

CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.917 0.971
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG

CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.917 0.971
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.878 0.905
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.878 0.905
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.850 0.876
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.850 0.876
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.844 0.867
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.844 0.867
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g099090.1 AP2 190 250
Bo3g099090.1 AP2 292 344

Links

Other AP2 family TFs
Other Brassica oleracea TFs

597 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA037732 Oryza indica BGIOSGA037732 N 0.000
BGIOSGA037734 Oryza indica BGIOSGA037734 N 0.000
Bo4g151030 Brassica oleracea Bo4g151030 I 0.000
Bo8g100870 Brassica oleracea Bo8g100870 I 0.000
Bra030207 Brassica rapa Bra030207 I 0.000
Bra039927 Brassica rapa Bra039927 I 0.000
GRMZM2G018472 Zea mays GRMZM2G018472 N 0.000
GRMZM2G165090 Zea mays GRMZM2G165090 N 0.000
LPERR12G15010 Leersia perrieri LPERR12G15010 N 0.000
OBART12G17960 Oryza barthii OBART12G17960 N 0.000
OBART12G18000 Oryza barthii OBART12G18000 N 0.000
OGLUM12G19500 Oryza glumaepatula OGLUM12G19500 N 0.000
OGLUM12G19510 Oryza glumaepatula OGLUM12G19510 N 0.000
OGLUM12G19530 Oryza glumaepatula OGLUM12G19530 N 0.000
ONIVA12G16580 Oryza nivara ONIVA12G16580 N 0.000
ONIVA12G16610 Oryza nivara ONIVA12G16610 N 0.000
OPUNC12G16280 Oryza punctata OPUNC12G16280 N 0.000
ORUFI12G19880 Oryza rufipogon ORUFI12G19880 N 0.000
ORUFI12G19910 Oryza rufipogon ORUFI12G19910 N 0.000
Sb08g020275 Sorghum bicolor Sb08g020275 N 0.000
Sb08g020280 Sorghum bicolor Sb08g020280 N 0.000
Sb08g020290 Sorghum bicolor Sb08g020290 N 0.000
Sb08g020300 Sorghum bicolor Sb08g020300 N 0.000
Sb08g020320 Sorghum bicolor Sb08g020320 N 0.000
Si024958m.g Setaria italica Si024958m.g N 0.000