CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra008985
(
Brassica rapa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bra008985
T001041_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SHN2
M06660_2.00
Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
SHN3_col_a
0.794
1.000
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra008985.1-P
AP2
5
56
RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQ
Links
Other
AP2
family TFs
Other
Brassica rapa
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy