Bra023404 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra023404 T001148_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.861 0.980
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.792 0.820
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.792 0.820
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.792 0.820
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR

YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.779 0.900
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY

RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.779 0.900
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.773 0.760
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.762 0.760
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.757 0.780
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.753 0.800
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.746 0.780
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.745 0.760
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.741 0.740
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.741 0.740
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.741 0.740
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.741 0.800
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.741 0.800
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.728 0.720
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.728 0.720
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.727 0.700
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.727 0.700
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.727 0.700
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH

DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.727 0.820
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN

NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.727 0.820
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD

HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.727 0.820
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY

RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.727 0.820
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.727 0.720
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.724 0.780
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.724 0.780
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.724 0.780
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.723 0.720
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.721 0.700
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.721 0.700
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.721 0.700
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.718 0.700
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.716 0.720
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN

NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.716 0.720
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD

HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.716 0.720
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.716 0.680
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN

NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.709 0.740
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN

NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.709 0.740
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN

NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.709 0.740
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH

DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.708 0.640
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD

HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.708 0.640
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.705 0.700
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN

NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.704 0.700
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN

NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.704 0.700
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.703 0.740
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN

NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.699 0.680
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.699 0.680
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY

RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.697 0.700
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.695 0.700
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.695 0.700
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.695 0.700
EREBP1
M09708_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.693 0.660
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN

NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.692 0.680
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN

NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.692 0.680
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD

HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.680 0.660
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN

NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.680 0.660
ERF069
M01604_2.00
Arabidopsis thaliana
NNGCCGNNN

NNNCGGCNN
PBM
Weirauch et al.(2014)
pTH7550
0.679 0.720
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.679 0.720
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.679 0.720
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.679 0.720
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.679 0.720
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.679 0.720
0100010458
M01644_2.00
Ostreococcus tauri
MGCCGSCR

YGSCGGCK
PBM
Weirauch et al.(2014)
pTH9447
0.679 0.680
Q84J59_MAIZE
M09717_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.679 0.660
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.678 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra023404.1-P AP2 70 121

Links

Other AP2 family TFs
Other Brassica rapa TFs

1818 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27940.m000323 Ricinus communis 27940.m000323 I 0.000
AMTR_s00008p00092930 Amborella trichopoda AMTR_s00008p00092930 I 0.000
Aquca_053_00062 Aquilegia coerulea Aquca_053_00062 I 0.000
Aquca_082_00024 Aquilegia coerulea Aquca_082_00024 I 0.000
Bo1g017650 Brassica oleracea Bo1g017650 I 0.000
Bo2g132210 Brassica oleracea Bo2g132210 I 0.000
Bo7g077300 Brassica oleracea Bo7g077300 I 0.000
Bo8g049560 Brassica oleracea Bo8g049560 I 0.000
Bo9g069320 Brassica oleracea Bo9g069320 I 0.000
Bostr.28243s0001 Boechera stricta Bostr.28243s0001 I 0.000
Bostr.30275s0218 Boechera stricta Bostr.30275s0218 I 0.000
Bra017500 Brassica rapa Bra017500 I 0.000
Bra017501 Brassica rapa Bra017501 I 0.000
Bra021041 Brassica rapa Bra021041 I 0.000
Bra022107 Brassica rapa Bra022107 I 0.000
Bra024961 Brassica rapa Bra024961 I 0.000
BRADI5G17370 Brachypodium distachyon BRADI5G17370 I 0.000
Cagra.3356s0048 Capsella grandiflora Cagra.3356s0048 I 0.000
Cagra.3675s0017 Capsella grandiflora Cagra.3675s0017 I 0.000
Carubv10007115m.g Capsella rubella Carubv10007115m.g I 0.000
Carubv10026597m.g Capsella rubella Carubv10026597m.g I 0.000
cassava42719.valid.m1 Manihot esculenta cassava42719.valid.m1 I 0.000
Ca_02313 Cicer arietinum Ca_02313 I 0.000
Ciclev10019614m.g Citrus clementina Ciclev10019614m.g I 0.000
estExt_fgenesh1_pg.C_1220019 Physcomitrella patens estExt_fgenesh1_pg.C_1220019 I 0.000
estExt_fgenesh1_pg.C_4100005 Physcomitrella patens estExt_fgenesh1_pg.C_4100005 I 0.000
Eucgr.D02129 Eucalyptus grandis Eucgr.D02129 I 0.000
Eucgr.E00364 Eucalyptus grandis Eucgr.E00364 I 0.000
evm.TU.supercontig_74.95 Carica papaya evm.TU.supercontig_74.95 I 0.000
F775_19309 Aegilops tauschii F775_19309 I 0.000
GATA26 Arabidopsis thaliana AT4G17570 D 0.000
GATA26 Arabidopsis lyrata fgenesh2_kg.7__2553__AT4G17570.1 I 0.000
GATA27 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8000066 I 0.000
GATA27 Arabidopsis thaliana AT5G47140 D 0.000
GLYMA01G41370 Glycine max GLYMA01G41370 I 0.000
GLYMA05G05320 Glycine max GLYMA05G05320 I 0.000
GLYMA11G04060 Glycine max GLYMA11G04060 I 0.000
GLYMA17G15610 Glycine max GLYMA17G15610 I 0.000
Gorai.003G177500 Gossypium raimondii Gorai.003G177500 I 0.000
Gorai.004G193200 Gossypium raimondii Gorai.004G193200 I 0.000
Gorai.006G214400 Gossypium raimondii Gorai.006G214400 I 0.000
Gorai.008G231500 Gossypium raimondii Gorai.008G231500 I 0.000
GSMUA_Achr11G17690_001 Musa acuminata GSMUA_Achr11G17690_001 I 0.000
GSMUA_Achr11G23110_001 Musa acuminata GSMUA_Achr11G23110_001 I 0.000
GSMUA_Achr2G18310_001 Musa acuminata GSMUA_Achr2G18310_001 I 0.000
GSMUA_Achr5G18290_001 Musa acuminata GSMUA_Achr5G18290_001 I 0.000
GSMUA_Achr8G15000_001 Musa acuminata GSMUA_Achr8G15000_001 I 0.000
LjSGA_060304.1 Lotus japonicus LjSGA_060304.1 I 0.000
Lus10000587.g Linum usitatissimum Lus10000587.g I 0.000
Lus10011008.g Linum usitatissimum Lus10011008.g I 0.000
Lus10011010.g Linum usitatissimum Lus10011010.g I 0.000
MDP0000129092 Malus domestica MDP0000129092 I 0.000
mgf015364m Mimulus guttatus mgf015364m I 0.000
mgf016271m Mimulus guttatus mgf016271m I 0.000
mgf024972m Mimulus guttatus mgf024972m I 0.000
MLOC_15510 Hordeum vulgare MLOC_15510 I 0.000
orange1.1g009155m.g Citrus sinensis orange1.1g009155m.g I 0.000
PGSC0003DMG400023781 Solanum tuberosum PGSC0003DMG400023781 I 0.000
PK11095.1 Cannabis sativa PK11095.1 I 0.000
POPTR_0001s15170 Populus trichocarpa POPTR_0001s15170 I 0.000
POPTR_0003s08080 Populus trichocarpa POPTR_0003s08080 I 0.000
SapurV1A.0107s0250 Salix purpurea SapurV1A.0107s0250 I 0.000
SapurV1A.0201s0160 Salix purpurea SapurV1A.0201s0160 I 0.000
TCM_015870 Theobroma cacao TCM_015870 I 0.000
Thhalv10000871m.g Eutrema salsugineum Thhalv10000871m.g I 0.000
Thhalv10024940m.g Eutrema salsugineum Thhalv10024940m.g I 0.000
Traes_2AL_01E6C08C0 Triticum aestivum Traes_2AL_01E6C08C0 I 0.000
Traes_2BL_4575D095D Triticum aestivum Traes_2BL_4575D095D I 0.000
Traes_2DL_C46B73FA3 Triticum aestivum Traes_2DL_C46B73FA3 I 0.000