CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI5G17480
(
Brachypodium distachyon
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
BRADI5G17480
T001372_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.776
0.878
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.776
0.878
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.759
0.857
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.759
0.857
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.759
0.857
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.740
0.878
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.723
0.898
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.719
0.735
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.719
0.735
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.713
0.755
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.692
0.735
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.692
0.735
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.685
0.673
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.681
0.755
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI5G17480.1
AP2
146
198
QHYRGVRMRPWGKFAAEIRDPAKNGARVWLGTYDAAEDAALAYDRAAYRMRGS
Links
Other
AP2
family TFs
Other
Brachypodium distachyon
TFs
576 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy