CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G053503
(
Zea mays
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GRMZM2G053503
T002114_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.717
0.837
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.717
0.837
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH
DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.696
0.755
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.696
0.755
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.696
0.755
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY
RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.696
0.755
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.694
0.837
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.692
0.816
EREBP1
M09708_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.685
0.796
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.679
0.694
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.679
0.694
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G053503_P02
AP2
58
109
NQYRGIRQRPWGKWAAEIRDPVKGVRVWLGTYPTAEAAARAYDRAARRIRGA
Links
Other
AP2
family TFs
Other
Zea mays
TFs
497 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy