PGSC0003DMG400008538 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400008538 T004371_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN

NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.863 0.960
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.843 0.920
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.843 0.920
AT5G65130
M06686_2.00
Arabidopsis thaliana
YCDYCDCCRCCGCCN

NGGCGGYGGHGRHGR
Dap-seq
OMalley et al.(2016)
At5g65130_col_a
0.717 0.860
AT5G65130
M06687_2.00
Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW

WKGKCGGYGSHDNNDNNNN
Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a
0.717 0.860
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN

NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.685 0.640
ERF054
M06647_2.00
Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC

GDCGGYGSHDDNNNNNNNNN
Dap-seq
OMalley et al.(2016)
At4g28140_col_a
0.685 0.800
ERF054
M06648_2.00
Arabidopsis thaliana
NNNNHDBCRCCGHCM

KGDCGGYGVHDNNNN
Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a
0.685 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400022023 AP2 153 204

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

458 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29864.m001503 Ricinus communis 29864.m001503 N 0.000
29912.m005288 Ricinus communis 29912.m005288 N 0.000
30169.m006445 Ricinus communis 30169.m006445 I 0.000
Al_scaffold_0003_1456 Arabidopsis lyrata Al_scaffold_0003_1456 N 0.000
AMTR_s00004p00174960 Amborella trichopoda AMTR_s00004p00174960 N 0.000
AMTR_s00048p00192930 Amborella trichopoda AMTR_s00048p00192930 I 0.000
AMTR_s00103p00144230 Amborella trichopoda AMTR_s00103p00144230 I 0.000
AMTR_s00155p00071520 Amborella trichopoda AMTR_s00155p00071520 N 0.000
Aquca_009_00676 Aquilegia coerulea Aquca_009_00676 N 0.000
BGIOSGA011352 Oryza indica BGIOSGA011352 I 0.000
BGIOSGA012852 Oryza indica BGIOSGA012852 N 0.000
BGIOSGA024793 Oryza indica BGIOSGA024793 N 0.000
BGIOSGA035818 Oryza indica BGIOSGA035818 N 0.000
Bo3g184530 Brassica oleracea Bo3g184530 N 0.000
Bo5g105110 Brassica oleracea Bo5g105110 I 0.000
Bostr.19424s0556 Boechera stricta Bostr.19424s0556 N 0.000
Bostr.28625s0302 Boechera stricta Bostr.28625s0302 N 0.000
Bostr.7128s0065 Boechera stricta Bostr.7128s0065 N 0.000
Bra023913 Brassica rapa Bra023913 N 0.000
Bra031242 Brassica rapa Bra031242 I 0.000
Bra037968 Brassica rapa Bra037968 N 0.000
BRADI1G72960 Brachypodium distachyon BRADI1G72960 I 0.000
BRADI4G01380 Brachypodium distachyon BRADI4G01380 N 0.000
BRADI4G01820 Brachypodium distachyon BRADI4G01820 N 0.000
Cagra.10399s0005 Capsella grandiflora Cagra.10399s0005 N 0.000
Cagra.20869s0002 Capsella grandiflora Cagra.20869s0002 N 0.000
Carubv10009883m.g Capsella rubella Carubv10009883m.g N 0.000
Carubv10014289m.g Capsella rubella Carubv10014289m.g N 0.000
Carubv10014390m.g Capsella rubella Carubv10014390m.g N 0.000
cassava2144.valid.m1 Manihot esculenta cassava2144.valid.m1 I 0.000
cassava2701.m1 Manihot esculenta cassava2701.m1 N 0.000
cassava29667.valid.m1 Manihot esculenta cassava29667.valid.m1 I 0.000
cassava30668.valid.m1 Manihot esculenta cassava30668.valid.m1 I 0.000
cassava36568.valid.m1 Manihot esculenta cassava36568.valid.m1 I 0.000
cassava38260.valid.m1 Manihot esculenta cassava38260.valid.m1 I 0.000
cassava38312.valid.m1 Manihot esculenta cassava38312.valid.m1 N 0.000
Ca_11593 Cicer arietinum Ca_11593 N 0.000
Ca_15574 Cicer arietinum Ca_15574 I 0.000
chr3.CM0724.30.nd Lotus japonicus chr3.CM0724.30.nd I 0.000
Ciclev10005144m.g Citrus clementina Ciclev10005144m.g I 0.000
Ciclev10015808m.g Citrus clementina Ciclev10015808m.g I 0.000
Ciclev10026020m.g Citrus clementina Ciclev10026020m.g I 0.000
Ciclev10032207m.g Citrus clementina Ciclev10032207m.g N 0.000
Cla008690 Citrullus lanatus Cla008690 N 0.000
Cla017115 Citrullus lanatus Cla017115 N 0.000
Cucsa.124180 Cucumis sativus Cucsa.124180 N 0.000
estExt_fgenesh2_pg.C_Chr_130205 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_130205 N 0.000
Eucgr.A02381 Eucalyptus grandis Eucgr.A02381 N 0.000
Eucgr.C00842 Eucalyptus grandis Eucgr.C00842 N 0.000
Eucgr.J00764 Eucalyptus grandis Eucgr.J00764 N 0.000
evm.TU.supercontig_125.6 Carica papaya evm.TU.supercontig_125.6 I 0.000
evm.TU.supercontig_25.96 Carica papaya evm.TU.supercontig_25.96 N 0.000
evm.TU.supercontig_84.49 Carica papaya evm.TU.supercontig_84.49 I 0.000
F775_07666 Aegilops tauschii F775_07666 N 0.000
F775_09086 Aegilops tauschii F775_09086 N 0.000
fgenesh1_pg.C_scaffold_286000001 Arabidopsis lyrata fgenesh1_pg.C_scaffold_286000001 N 0.000
gene07522-v1.0-hybrid Fragaria vesca gene07522-v1.0-hybrid N 0.000
gene12709-v1.0-hybrid Fragaria vesca gene12709-v1.0-hybrid N 0.000
gene14681-v1.0-hybrid Fragaria vesca gene14681-v1.0-hybrid I 0.000
gene26819-v1.0-hybrid Fragaria vesca gene26819-v1.0-hybrid N 0.000
GLYMA02G47380 Glycine max GLYMA02G47380 N 0.000
GLYMA08G45030 Glycine max GLYMA08G45030 I 0.000
GLYMA09G07960 Glycine max GLYMA09G07960 I 0.000
GLYMA13G16770 Glycine max GLYMA13G16770 N 0.000
GLYMA14G01360 Glycine max GLYMA14G01360 N 0.000
GLYMA15G18970 Glycine max GLYMA15G18970 I 0.000
GLYMA16G00711 Glycine max GLYMA16G00711 I 0.000
GLYMA17G05920 Glycine max GLYMA17G05920 I 0.000
GLYMA18G07890 Glycine max GLYMA18G07890 I 0.000
Gorai.002G151800 Gossypium raimondii Gorai.002G151800 I 0.000
Gorai.002G234400 Gossypium raimondii Gorai.002G234400 N 0.000
Gorai.003G093300 Gossypium raimondii Gorai.003G093300 I 0.000
Gorai.004G066000 Gossypium raimondii Gorai.004G066000 I 0.000
Gorai.004G172100 Gossypium raimondii Gorai.004G172100 I 0.000
Gorai.011G057600 Gossypium raimondii Gorai.011G057600 N 0.000
Gorai.012G010900 Gossypium raimondii Gorai.012G010900 N 0.000
GRMZM2G000686 Zea mays GRMZM2G000686 I 0.000
GRMZM2G038303 Zea mays GRMZM2G038303 I 0.000
GRMZM2G040349 Zea mays GRMZM2G040349 I 0.000
GRMZM2G361842 Zea mays GRMZM2G361842 N 0.000
GRMZM5G829103 Zea mays GRMZM5G829103 N 0.000
GSMUA_Achr2G12930_001 Musa acuminata GSMUA_Achr2G12930_001 N 0.000
GSMUA_Achr2G21730_001 Musa acuminata GSMUA_Achr2G21730_001 N 0.000
GSMUA_Achr4G11090_001 Musa acuminata GSMUA_Achr4G11090_001 I 0.000
GSMUA_Achr4G28390_001 Musa acuminata GSMUA_Achr4G28390_001 N 0.000
GSMUA_Achr4G31420_001 Musa acuminata GSMUA_Achr4G31420_001 N 0.000
GSMUA_Achr4G31650_001 Musa acuminata GSMUA_Achr4G31650_001 N 0.000
GSMUA_Achr7G07860_001 Musa acuminata GSMUA_Achr7G07860_001 N 0.000
GSMUA_Achr8G30700_001 Musa acuminata GSMUA_Achr8G30700_001 I 0.000
GSMUA_Achr9G10300_001 Musa acuminata GSMUA_Achr9G10300_001 N 0.000
GSMUA_AchrUn_randomG15140_001 Musa acuminata GSMUA_AchrUn_randomG15140_001 I 0.000
LjSGA_007063.1 Lotus japonicus LjSGA_007063.1 N 0.000
LPERR03G04900 Leersia perrieri LPERR03G04900 I 0.000
LPERR12G16030 Leersia perrieri LPERR12G16030 N 0.000
Lus10009944.g Linum usitatissimum Lus10009944.g I 0.000
Lus10011326.g Linum usitatissimum Lus10011326.g I 0.000
Lus10012202.g Linum usitatissimum Lus10012202.g I 0.000
Lus10016411.g Linum usitatissimum Lus10016411.g I 0.000
Lus10019708.g Linum usitatissimum Lus10019708.g I 0.000
Lus10023358.g Linum usitatissimum Lus10023358.g N 0.000
Lus10030137.g Linum usitatissimum Lus10030137.g I 0.000
Lus10038448.g Linum usitatissimum Lus10038448.g N 0.000
MDP0000223651 Malus domestica MDP0000223651 N 0.000
MDP0000434309 Malus domestica MDP0000434309 N 0.000
MDP0000506954 Malus domestica MDP0000506954 N 0.000
MDP0000827821 Malus domestica MDP0000827821 N 0.000
mgf023644m Mimulus guttatus mgf023644m N 0.000
MLOC_52315 Hordeum vulgare MLOC_52315 N 0.000
MLOC_62730 Hordeum vulgare MLOC_62730 I 0.000
MLOC_76757 Hordeum vulgare MLOC_76757 N 0.000
MTR_2g041090 Medicago truncatula MTR_2g041090 N 0.000
NF-YA9 Arabidopsis lyrata scaffold_302497.1 N 0.000
NFYA5 Arabidopsis thaliana AT1G54160 N 0.000
NFYA5 Arabidopsis lyrata Al_scaffold_0001_4860 N 0.000
NFYA6 Arabidopsis thaliana AT3G14020 N 0.000
NFYA9 Arabidopsis thaliana AT3G20910 N 0.000
OB03G15670 Oryza brachyantha OB03G15670 I 0.000
OB03G35340 Oryza brachyantha OB03G35340 N 0.000
OB12G25960 Oryza brachyantha OB12G25960 N 0.000
OBART03G05590 Oryza barthii OBART03G05590 I 0.000
OBART03G21180 Oryza barthii OBART03G21180 I 0.000
OBART12G19060 Oryza barthii OBART12G19060 N 0.000
OGLUM03G05530 Oryza glumaepatula OGLUM03G05530 I 0.000
OGLUM03G21930 Oryza glumaepatula OGLUM03G21930 I 0.000
OGLUM07G02990 Oryza glumaepatula OGLUM07G02990 N 0.000
OGLUM12G20730 Oryza glumaepatula OGLUM12G20730 N 0.000
OLONG_002491 Oryza longistaminata OLONG_002491 N 0.000
OLONG_006679 Oryza longistaminata OLONG_006679 I 0.000
OLONG_009142 Oryza longistaminata OLONG_009142 I 0.000
OMERI03G05270 Oryza meridionalis OMERI03G05270 I 0.000
OMERI07G18960 Oryza meridionalis OMERI07G18960 N 0.000
OMERI12G13600 Oryza meridionalis OMERI12G13600 N 0.000
ONIVA03G05390 Oryza nivara ONIVA03G05390 I 0.000
ONIVA03G10270 Oryza nivara ONIVA03G10270 I 0.000
ONIVA07G02150 Oryza nivara ONIVA07G02150 N 0.000
ONIVA12G18060 Oryza nivara ONIVA12G18060 N 0.000
OPUNC03G05290 Oryza punctata OPUNC03G05290 I 0.000
OPUNC07G03530 Oryza punctata OPUNC07G03530 N 0.000
orange1.1g017825m.g Citrus sinensis orange1.1g017825m.g I 0.000
orange1.1g019036m.g Citrus sinensis orange1.1g019036m.g I 0.000
orange1.1g019764m.g Citrus sinensis orange1.1g019764m.g N 0.000
orange1.1g019782m.g Citrus sinensis orange1.1g019782m.g I 0.000
ORGLA03G0053200 Oryza glaberrima ORGLA03G0053200 I 0.000
ORGLA03G0197400 Oryza glaberrima ORGLA03G0197400 I 0.000
ORGLA07G0030900 Oryza glaberrima ORGLA07G0030900 N 0.000
ORGLA12G0163500 Oryza glaberrima ORGLA12G0163500 N 0.000
ORUFI03G05370 Oryza rufipogon ORUFI03G05370 I 0.000
ORUFI03G21850 Oryza rufipogon ORUFI03G21850 I 0.000
ORUFI12G21270 Oryza rufipogon ORUFI12G21270 N 0.000
OS03G0174900 Oryza sativa OS03G0174900 I 0.000
OS03G0411100 Oryza sativa OS03G0411100 N 0.000
OS07G0158500 Oryza sativa OS07G0158500 N 0.000
OS12G0618600 Oryza sativa OS12G0618600 N 0.000
Pavir.Ba00442 Panicum virgatum Pavir.Ba00442 I 0.000
Pavir.Ia04345 Panicum virgatum Pavir.Ia04345 I 0.000
Pavir.Ib00471 Panicum virgatum Pavir.Ib00471 I 0.000
Pavir.Ib01915 Panicum virgatum Pavir.Ib01915 I 0.000
Pavir.J05826 Panicum virgatum Pavir.J05826 I 0.000
PDK_20s1300541g001 Phoenix dactylifera PDK_20s1300541g001 I 0.000
PGSC0003DMG400000272 Solanum tuberosum PGSC0003DMG400000272 N 0.000
PGSC0003DMG400021747 Solanum tuberosum PGSC0003DMG400021747 I 0.000
PK11147.1 Cannabis sativa PK11147.1 I 0.000
PK17701.1 Cannabis sativa PK17701.1 N 0.000
PK20005.1 Cannabis sativa PK20005.1 N 0.000
PK21261.1 Cannabis sativa PK21261.1 I 0.000
Pm012301 Prunus mume Pm012301 I 0.000
POPTR_0001s27300 Populus trichocarpa POPTR_0001s27300 N 0.000
POPTR_0006s05210 Populus trichocarpa POPTR_0006s05210 I 0.000
POPTR_0006s14740 Populus trichocarpa POPTR_0006s14740 N 0.000
POPTR_0009s06540 Populus trichocarpa POPTR_0009s06540 N 0.000
POPTR_0018s07220 Populus trichocarpa POPTR_0018s07220 N 0.000
PRUPE_ppa006634mg Prunus persica PRUPE_ppa006634mg I 0.000
PRUPE_ppa016008mg Prunus persica PRUPE_ppa016008mg N 0.000
SapurV1A.0027s0420 Salix purpurea SapurV1A.0027s0420 N 0.000
SapurV1A.0087s0010 Salix purpurea SapurV1A.0087s0010 N 0.000
SapurV1A.0111s0280 Salix purpurea SapurV1A.0111s0280 N 0.000
SapurV1A.1588s0020 Salix purpurea SapurV1A.1588s0020 N 0.000
SapurV1A.2739s0010 Salix purpurea SapurV1A.2739s0010 N 0.000
Sb01g013430 Sorghum bicolor Sb01g013430 N 0.000
Sb01g032710 Sorghum bicolor Sb01g032710 I 0.000
Sb01g045500 Sorghum bicolor Sb01g045500 I 0.000
Sb02g038960 Sorghum bicolor Sb02g038960 I 0.000
Si030663m.g Setaria italica Si030663m.g I 0.000
Si036728m.g Setaria italica Si036728m.g I 0.000
Si037269m.g Setaria italica Si037269m.g I 0.000
Solyc12g009050.1 Solanum lycopersicum Solyc12g009050.1 N 0.000
TCM_024732 Theobroma cacao TCM_024732 I 0.000
TCM_029103 Theobroma cacao TCM_029103 N 0.000
TCM_037576 Theobroma cacao TCM_037576 N 0.000
TCM_040712 Theobroma cacao TCM_040712 I 0.000
Thhalv10011685m.g Eutrema salsugineum Thhalv10011685m.g N 0.000
Thhalv10021240m.g Eutrema salsugineum Thhalv10021240m.g I 0.000
Thhalv10021250m.g Eutrema salsugineum Thhalv10021250m.g N 0.000
Traes_4AS_2603E68AF Triticum aestivum Traes_4AS_2603E68AF I 0.000
Traes_4BL_7DA93696E Triticum aestivum Traes_4BL_7DA93696E I 0.000
Traes_4DL_8156B39DF Triticum aestivum Traes_4DL_8156B39DF I 0.000
Traes_5AS_178725FAF Triticum aestivum Traes_5AS_178725FAF N 0.000
Traes_5AS_378F353CF Triticum aestivum Traes_5AS_378F353CF N 0.000
Traes_5BS_49C7C1976 Triticum aestivum Traes_5BS_49C7C1976 N 0.000
Traes_5BS_F1DE20B4B Triticum aestivum Traes_5BS_F1DE20B4B N 0.000
Traes_5DS_443F1993A Triticum aestivum Traes_5DS_443F1993A N 0.000
Traes_5DS_5B1AB0AD3 Triticum aestivum Traes_5DS_5B1AB0AD3 N 0.000
TRIUR3_08409 Triticum urartu TRIUR3_08409 I 0.000
TRIUR3_28596 Triticum urartu TRIUR3_28596 N 0.000
TRIUR3_30486 Triticum urartu TRIUR3_30486 N 0.000
VIT_08s0007g08250 Vitis vinifera VIT_08s0007g08250 I 0.000
VIT_13s0064g00860 Vitis vinifera VIT_13s0064g00860 I 0.000