Si019328m.g (Setaria italica)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Si019328m.g T005306_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LEP
M06661_2.00
Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH

DDNDRHDDHDRCGGCGGMGVN
Dap-seq
OMalley et al.(2016)
LEP_col_a
0.777 0.760
Q84J59_MAIZE
M09717_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.746 0.700
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD

HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.744 0.720
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN

NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.744 0.720
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN

NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.737 0.740
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN

NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.737 0.740
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.737 0.740
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.737 0.740
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.737 0.740
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.728 0.740
HRE1
M06595_2.00
Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHKVNDN
Dap-seq
OMalley et al.(2016)
ERF73_col_a
0.728 0.680
HRE1
M06596_2.00
Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY

RYGGCGGCGGHGRNDKHDRND
Dap-seq
OMalley et al.(2016)
ERF73_colamp_a
0.728 0.680
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.727 0.700
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.727 0.700
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.726 0.720
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.721 0.720
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.721 0.720
ERF087
M06573_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYYD

HRRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
AT1G28160_col_a
0.718 0.720
ERF087
M06574_2.00
Arabidopsis thaliana
HDYCKCCGCCGYCR

YGRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a
0.718 0.720
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.714 0.640
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.707 0.700
ERF8
M01608_2.00
Arabidopsis thaliana
MGCCGNMNNN

NNNKNCGGCK
PBM
Weirauch et al.(2014)
pTH8095
0.699 0.700
ERF8
M06586_2.00
Arabidopsis thaliana
NYHDYCKCCGCCGYH

DRCGGCGGMGRHDRN
Dap-seq
OMalley et al.(2016)
ERF8_col_a
0.699 0.700
ERF8
M06587_2.00
Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN

NHDDYGRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ERF8_colamp_a
0.699 0.700
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.693 0.720
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.691 0.620
RAP2-3
M01050_2.00
Arabidopsis thaliana
CGCCGCCR

YGGCGGCG
PBM
Sullivan et al.(2014)
pTH8811
0.689 0.680
RAP2-3
M00847_2.00
Arabidopsis thaliana
NMGCCGCCDN

NHGGCGGCKN
PBM
Franco-Zorrilla et al.(2014)
RAP2.3
0.689 0.680
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.687 0.700
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.687 0.700
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.687 0.700
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.687 0.700
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.687 0.700
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN

NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.687 0.660
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN

NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.687 0.660
0100010458
M01644_2.00
Ostreococcus tauri
MGCCGSCR

YGSCGGCK
PBM
Weirauch et al.(2014)
pTH9447
0.687 0.680
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN

NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.684 0.700
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD

HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.684 0.700
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH

DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.684 0.700
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.679 0.660
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.677 0.680
EREBP1
M09708_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.677 0.620
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.677 0.620
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si019328m AP2 39 90

Links

Other AP2 family TFs
Other Setaria italica TFs

1255 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004704 Ricinus communis 29929.m004704 D 0.000
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.000
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.000
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.000
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.000
GT-1 Arabidopsis thaliana AT1G13450 D 0.000
GT-4 Arabidopsis thaliana AT3G25990 D 0.000
Bo2g138840 Brassica oleracea Bo2g138840 I 0.000
Bo5g017510 Brassica oleracea Bo5g017510 I 0.000
Bo8g107400 Brassica oleracea Bo8g107400 I 0.000
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.000
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.000
Bra019721 Brassica rapa Bra019721 I 0.000
Bra026903 Brassica rapa Bra026903 I 0.000
Bra036354 Brassica rapa Bra036354 I 0.000
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.000
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.000
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.000
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.000
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.000
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.000
Ca_11315 Cicer arietinum Ca_11315 I 0.000
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.000
Cla023054 Citrullus lanatus Cla023054 I 0.000
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.000
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.000
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.000
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.000
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.000
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.000
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.000
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.000
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.000
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.000
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.000
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.000
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.000
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.000
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.000
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.000
MDP0000164819 Malus domestica MDP0000164819 D 0.000
mgf016368m Mimulus guttatus mgf016368m I 0.000
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.000
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.000
OB04G23970 Oryza brachyantha OB04G23970 I 0.000
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.000
OS04G0486400 Oryza sativa OS04G0486400 D 0.000
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.000
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.000
PK20543.1 Cannabis sativa PK20543.1 D 0.000
Pm006885 Prunus mume Pm006885 I 0.000
Pm016214 Prunus mume Pm016214 I 0.000
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.000
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.000
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.000
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.000
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.000
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.000
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.000
Si010147m.g Setaria italica Si010147m.g I 0.000
Si036121m.g Setaria italica Si036121m.g I 0.000
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.000
TCM_010751 Theobroma cacao TCM_010751 I 0.000
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.000
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.000
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.000
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.000